SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | P54939 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2008-09-01. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 1837 LDEGPMG EPEGTFVDYQ TTMVKTAKAI AVTVQEMVTK STTNPDELGI
2b0hA 1837 g--idpftmg dpegsfvdyq ttmvrtakai avtvqemvtk sntspeelgp
TARGET hhhhhhhh hhhhhhhhhh hhhhhhhhhh h hhhhh
2b0hA hhhhhhhh hhhhhhhhhh hhhhhhhhhh h hhhhh
TARGET 1884 LANQLTNDYG QLAQQAKPAA LTAENEEIGS HIKRRVQELG HGCAALVTKA
2b0hA 1885 lanqltsdyg rlasqakpaa vaaeneeiga hikhrvqelg hgcsalvtka
TARGET hhhhhhhhhh hhhhhhhhh hhhhh hhhhhhhhhh hhhhhhhhhh
2b0hA hhhhhhhhhh hhh hhh hhhhh hhhhhhhhhh hhhhhhhhhh
TARGET 1934 GALQCSPSDA YTKKELIESA RKVSEKVSHV LAALQAGNR
2b0hA 1935 galqcspsdv ytkkelieca rrvsekvshv laalqagnr-
TARGET hhhhh hhhhhhhhhh hhhhhhhhhh hhhh
2b0hA hhhhh hhhhhhhhhh hhhhhhhhhh hhhh
no data available!
no data available!
Template Selection
START PIPELINE ON ID: 7b5b6e802a27e01c991a6a428f6bc8d9 on BC2-cluster at Mon Sep 1 04:16:36 2008 BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND: 6 BUT STILL ROOM FOR IMPROVEMENT GO TO HHSEARCH ############# TEMPLATES SELECTED ############# >7b5b6e802a27e01c991a6a428f6bc8d9 ******************************************************************************** >1mixA Evalue:2.12451e-122 SeqID:100.000 Method:BLAST Type:PDB ------*******------------------------------------------------------------------- >1sj8A Evalue:1.19774e-113 SeqID:89.562 Method:BLAST Type:MODEL ---------------*********-------------------------------------------------------- >2jswA Evalue:5.49741e-66 SeqID:94.681 Method:BLAST Type:MODEL ------------------------------------------------------------------------******-- >2b0hA Evalue:2.92683e-53 SeqID:83.824 Method:BLAST Type:MODEL ---------------------------------------------------------*****------------------ >1u89A Evalue:5.04156e-48 SeqID:89.630 Method:BLAST Type:MODEL ------------------------****---------------------------------------------------- >2qdqA Evalue:6.94908e-06 SeqID:97.059 Method:BLAST Type:MODEL ------------------------------------------------------------------------------*- >1h6gA Evalue:2.5E-20 SeqID:16.078 Method:HHSEARCH Type:MODEL ----------------------------------*****-**-------------------------------------- >1h4rA Evalue:1.4E-45 SeqID:17.964 Method:HHSEARCH Type:MODEL ---*-********------------------------------------------------------------------- >1h6gA Evalue:1.9E-14 SeqID:13.004 Method:HHSEARCH Type:MODEL ---------------------***-***---------------------------------------------------- TEMPLATE ID START STOP METHOD STATUS 1mixA 196 400 BLAST PDB 1sj8A 486 782 BLAST BUILT 2jswA 2295 2481 BLAST BUILT 2b0hA 1837 1972 BLAST BUILT 1u89A 755 889 BLAST BUILT 2qdqA 2494 2527 BLAST BUILT 1h6gA 1101 1350 HHSEARCH BUILT 1h4rA 84 405 HHSEARCH BUILT 1h6gA 681 898 HHSEARCH BUILT FINISHED PIPELINE ON ID: 7b5b6e802a27e01c991a6a428f6bc8d9 on gopt-14.cluster.bc2.ch BC2-Cluster at Mon Sep 1 04:47:55 2008
Template Search
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.