SWISS-MODEL Repository - Model Details

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1
159

Sequence
UniProt P59742
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Globin

Model 3D Structure
Model information:
Modelled residue range: 3 to 150
Based on template: [ 1cg5 ]  
Sequence Identity [%]: 21%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3        KLTEKEK ELIRVSWESL GKDKVPHGVI MFSRLFELEP ALLNLFHYNT
1cg5B     1     v--klsedqe hyikgvwkdv dhkq--itak alervfvvyp wttrlfsklq
                                                                      
TARGET                hhhh hhhhhhhhh         hhh hhhhhhh    hhh       
1cg5B                 hhhh hhhhhhhh    hhh  hhhh hhhhhhh       h      


TARGET    50    NCGTIQDCLS SPEFLDHVTK VMLVIDAAVS HLDNLHTLED FLLNLGKKHQ
1cg5B     47    glfsa----n digvqqhadk vqralgeaid dlkk---vei nfqnlsgkhq
                                                                      
TARGET                      hhhhhhhhh hhhhhhhhh          hh    hhhhhhh
1cg5B                       hhhhhhhhh hhhhhhhhh         hhh    hhhhhhh


TARGET    100   AVGVNTQSFA VVGESLLYML QCSLGQGYTA PLRQAWLNMY TIVVAAMSRG
1cg5B     90    eigvdtqnfk llgqtfmvel alhykktfrp kehaaaykff rlvaealssn
                                                                      
TARGET          hh    hhhh hhhhhhhhhh hhhh     h hhhhhhhhhh hhhhhhhh  
1cg5B           hh    hhhh hhhhhhhhhh hhhh     h hhhhhhhhhh hhhhhhhh  


TARGET    150   W                                                     
1cg5B     140   yh                                                    
                                                                      
TARGET                                                                
1cg5B

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3f2cf580deb82784d50e592d4a9da1cb on BC2-cluster at Sun Aug 31 07:39:10 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>3f2cf580deb82784d50e592d4a9da1cb
********************************************************************************
>1cg5B Evalue:1.2E-28 SeqID:21.622 Method:HHSEARCH Type:MODEL
-**************************--*************-********************************-----


TEMPLATE ID    START          STOP           METHOD         STATUS         
1cg5B          3              150            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 3f2cf580deb82784d50e592d4a9da1cb on gopt-52.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 07:41:54 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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