SWISS-MODEL Repository - Model Details

Model Overview
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1
505

Sequence
UniProt P72785
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Glyco_hydro_77

Model 3D Structure
Model information:
Modelled residue range: 1 to 499
Based on template: [ 1cwy ]  
Sequence Identity [%]: 48%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MLDKRCSG ILLHPTSLPS RFGIGDLGDG AFQFIDFLAD ADQSVWQILP
1cwyA     1       melprafg lllhptslpg pygvgvlgre ardflrflke aggrywqvlp
                                                                      
TARGET                 sss sss                hh hhhhhhhhhh h  sssss  
1cwyA                  sss sss                hh hhhhhhhhhh h  sssss  


TARGET    49    LGPTGFGNSP YLCYSALAIN PWLISLDRLA EEGFLPPSLL DQAPPFTNPR
1cwyA     49    lgptgygdsp yqsfsafagn pylidlrpla ergyvrled- ---pgfpqgr
                                                                      
TARGET                                      hhhh                    ss
1cwyA                                       hhhh                    ss


TARGET    99    VDYDQAIAYK SQVLKQAFAQ FRTNIELAIE QEFAEFCQAQ SDWLADYALF
1cwyA     95    vdygllyawk wpalkeafrg fkekaspeer eafaafrere awwledyalf
                                                                      
TARGET          s hhhhhhhh hhhhhhhhhh hhh   hhhh hhhhh          hhhhhh
1cwyA           s hhhhhhhh hhhhhhhhhh hhh   hhhh hhhhhhhh       hhhhhh


TARGET    149   MAIKEAHNGA GWHQWDKDIA WREPEALKIW GDRLKTEVLY HQFLQFLGFR
1cwyA     145   malkgahggl pwnrwplplr kreekalrea ksalaeevaf haftqwlffr
                                                                      
TARGET          hhhhhh           hhh    hhhhhhhh hh   hhhhh hhhhhhhhhh
1cwyA           hhhhhh           hhh    hhhhhhhh hh   hhhhh hhhhhhhhhh


TARGET    199   QWQEVKAYAN QRHIAIFGDL PIYVAHDSAD VWANPENFCL DPETGEAAMM
1cwyA     195   qwgalkaeae algiriigdm pifvaedsae vwahpewfhl d-eegrptvv
                                                                      
TARGET          hhhhhhhhhh h   ssssss ss      hh hhh   ssss s    sssss
1cwyA           hhhhhhhhhh hh  ssssss ss      hh hhh   ssss s    sssss


TARGET    249   AGVPPDYFSA TGQLWGNPVY DWETLKATGF AWWIKRFKAN LQYLDIVRID
1cwyA     244   agvppdyfse tgqrwgnply rwdvleregf sfwirrleka lelfhlvrid
                                                                      
TARGET          sss          sss   ss shhhhhh    hhhhhhhhhh hhh  sssss
1cwyA           sss          sss   ss shhhhhh    hhhhhhhhh    h  sssss


TARGET    299   HFRGFESYWG VPQGEKTAEN GEWYPAPGKE FFQALGKALG DNLPIVAEDL
1cwyA     294   hfrgfeaywe ipascptave grwvkapgek lfqkiqevfg e-vpvlaedl
                                                                      
TARGET            hhhsssss sss         sssss hhh hhhhhhhhh     sss    
1cwyA             hhhsssss sss         sssss hhh hhhhhhhhh     sss    


TARGET    349   GVITPEVEAL RDEFNFPGMK VLHFAFDSDR GNPFLPFNYS N-GNAVVYTG
1cwyA     343   gvitpeveal rdrfglpgmk vlqfafddgm enpflphnyp ahgrvvvytg
                                                                      
TARGET              hhhhhh hh     sss sshh                       sss  
1cwyA               hhhhhh hh     sss sshh                       sss  


TARGET    398   THDNDTTVGW FQERSEDDQQ KVINYL---- -GCVCNEGIH WSLIRLASSS
1cwyA     393   thdndttlgw yrtatpheka fmaryladwg itfreeeevp walmhlgmks
                                                                      
TARGET                hhhh h    hhhhh hhhhh             hhh hhhhhhhhh 
1cwyA                 hhhh h    hhhhh hhhhhhhh         hhhh hhhhhhhhh 


TARGET    443   VAALAIFPLQ DILGLGSDCR MNLPGTAAGN WGWRYHPDQL NDWLSGHLSF
1cwyA     443   varlavypvq dvlalgsear mnypgrpsgn wawrllpgel spehgarlra
                                                                      
TARGET            sssssssh hhh                    sss        hhhhhhhhh
1cwyA             sssssssh hhh                    sss        hhhhhhhhh


TARGET    493   ITELYGR                                               
1cwyA     493   maeaterl                                              
                                                                      
TARGET          hhhhh                                                 
1cwyA           hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: c5a90d5e529c79e6b245baec87d5f2f5 on BC2-cluster at Sat Aug 30 15:21:58 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>c5a90d5e529c79e6b245baec87d5f2f5
*************************************************************************************
>1cwyA Evalue:0 SeqID:48.713 Method:HHSEARCH Type:MODEL
***********************************************************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1cwyA          1              499            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: c5a90d5e529c79e6b245baec87d5f2f5 on gopt-58.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 15:26:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.