SWISS-MODEL Repository - Model Details

Model Overview
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1
78

Sequence
UniProt P72851 50S ribosomal protein L28
Synechocystis sp. (strain PCC 6803 / Kazusa).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

STRING
P72851: 1148.ssr1604

Domain
Link to: [ InterPro ]
Ribosomal_L28

Model 3D Structure
Model information:
Modelled residue range: 3 to 77
Based on template: [ 3bbo ]  
Sequence Identity [%]: 60%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    3       RRCQLTGK KANNGFAVSH SHRRTKKLQQ ANLQWKRVWW PEGNRFVRLR
3bboY     76      ricpftgk ksnrankvsh snhktkklqf vnlqykriww eagkryvklr
                                                                      
TARGET                             ss s     sss                       
3bboY                              ss s     sss                       


TARGET    51    LSTTAIKTLE SKGINAMAKE AGINLNK                         
3bboY     124   lstkaiktie kngldavakk agidlskk                        
                                                                      
TARGET                                                                
3bboY                                                                 



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: 4f08545126761659c98cfe25239e12c7 on BC2-cluster at Sun Aug 31 13:54:19 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>4f08545126761659c98cfe25239e12c7
******************************************************************************
>3bboY Evalue:3.38452e-16 SeqID:60.000 Method:BLAST Type:MODEL
--***************************************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
3bboY          3              77             BLAST          BUILT          

FINISHED PIPELINE ON ID: 4f08545126761659c98cfe25239e12c7 on gopt-76.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 13:54:22 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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