SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
276

Sequence
UniProt P72988 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase)
Synechocystis sp. (strain PCC 6803 / Kazusa).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
LpxC

Model 3D Structure
Model information:
Modelled residue range: 1 to 273
Based on template: [ 1p42 ]  
Sequence Identity [%]: 35%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1        MGHTIKA PLTVQGVGLH SGVETTVTLC PVAAGKGRYF QRVDLPKKPI
1p42A     2     g--lektvke klsfegvgih tgeyskliih pekegtgirf fkngv----y
                                                                      
TARGET              sss     sssssss     ssssssss       ssss s         
1p42A           s  ssssss   sssssss     ssssssss       ssss ss  s    s


TARGET    48    IPADLTWVRE AMLSTELGEP GATIRTVEHL LATLVALDIG DLRIEVNGPE
1p42A     46    iparhefvvh tnhstdlgfk gqriktvehi lsvlhlleit nvtievigne
                                                                      
TARGET          sss   sss      sssss   sssss hhh hhhhhhh     ssssss   
1p42A           sss   sss      sssss   sssss hhh hhhhhhh     ssssss   


TARGET    98    VPLLDGSALS WLTAIAKVGT RPRSKKSQDQ PIVITDPLTC QLEDAFVAAF
1p42A     101   ipildgsgwe fyeairk-ni lnq--nreid yfvveepiiv edegrlikae
                                                                      
TARGET                  hh hhhhh      sss         sss   sss ss  ssssss
1p42A                   hh hhhhhh  ss sss   sss   sss   sss ss  ssssss


TARGET    148   PCATTRFSYG VDYPYLPIGK QWYTWEPDQE NFATAIAPAR TFGFADQIEK
1p42A     149   psdtlevtye gefkn-flgr qkftfv---e gneeeivlar tfafdweieh
                                                                      
TARGET               sssss sss     ss sssss                 sssss   hh
1p42A                sssss sss     ss sssss                 sssss   hh


TARGET    198   LRQAGLIKGG SLENALVCDK EKWLNP-PLR FPDEPVRHKL LDLLGDLSLL
1p42A     201   ikkvglgkgg slkntlvlgk dkvynpeglr yenepvrhkv fdligdlyll
                                                                      
TARGET          hhh             ssss   sss          hhhhhhh hhhhhhhhh 
1p42A           hhh             ssss   sss          hhhhhhh hhhhhhhhh 


TARGET    247   GKIPQAHFVA YKASHKLHTQ LAQKIAD --                      
1p42A     251   gspvkgkfys frgghslnvk lvkelakkqk                      
                                                                      
TARGET            ssssssss ss  hhhhhh hhhhhhh                         
1p42A             ssssssss ss  hhhhhh hhhhhhh                         



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: 49986250885cbb414f53a2240ee0b6c5 on BC2-cluster at Sat Aug 30 21:20:50 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>49986250885cbb414f53a2240ee0b6c5
********************************************************************************************
>1p42A Evalue:0 SeqID:35.401 Method:HHSEARCH Type:MODEL
**************-*************************-*****************-********************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1p42A          1              273            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 49986250885cbb414f53a2240ee0b6c5 on gopt-68.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 21:23:07 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.