SWISS-MODEL Repository - Model Details

Model Overview
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1
569

Sequence
UniProt P73061
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P73061: 1148.sll1750

Domain
Link to: [ InterPro ]
Urease_alpha
Amidohydro_1

Model 3D Structure
Model information:
Modelled residue range: 5 to 569
Based on template: [ 2kau ]  
Sequence Identity [%]: 70%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    5         MDRHSY AHTFGPTVGD KVRLADTELF IEVEQDYATY GDEVKFGGGK
2kauC     2     sn--isrqay admfgptvgd kvrladtelw ieveddltty geevkfgggk
                                                                      
TARGET                hhhh hhh      s ssss    ss sss            sss ss
2kauC                 hhhh hhh      s ssss    ss sss            sss ss


TARGET    51    VIRDGMGQSP LSRAEGAVDV VITNALILDW WGIVKADVGI KNGRIYAIGK
2kauC     50    virdgmgqgq mlaad-cvdl vltnalivdh wgivkadigv kdgrifaigk
                                                                      
TARGET          sss sss            ss sss sssss   sssssssss s ssssssss
2kauC           sss sss            ss sss sssss   sssssssss s ssssssss


TARGET    101   AGNPHIQDNV SIIIGPSTEA IAGEGMILTA GGIDAHVHFI CPQQIETALA
2kauC     99    agnpdiqpnv tipigaatev iaaegkivta ggidthihwi cpqqaeealv
                                                                      
TARGET          ss          sss    ss sss  sssss ssss  sss    hhhhhhhh
2kauC           ss          sss    ss sss  sssss ssss  sss    hhhhhhhh


TARGET    151   SGVTTLVGGG TGPAAGTKAT TCTPGAWNIH RMLQAADGFP INLGFLGKGN
2kauC     149   sgvttmvggg tgpaagthat tctpgpwyis rmlqaadslp vnigllgkgn
                                                                      
TARGET          h  ssssss      hhhhh       hhhhh hhhhhhh     ssssssss 
2kauC           h  ssssss      hhhhh       hhhhh hhhhhhh     ssssssss 


TARGET    201   GSQPAALAEQ IKAGAIGLKL HEDWGTTPAA IDNCLGVAED YDVQVAIHTD
2kauC     199   vsqpdalreq vaagviglki hedwgatpaa idcaltvade mdiqvalhsd
                                                                      
TARGET              hhhhhh hhh   ssss ss     hhh hhhhhhhhhh h  sssss  
2kauC               hhhhhh hhh   ssss ss     hhh hhhhhhhhhh h  sssss  


TARGET    251   TLNEAGFVET TIAALKNRVI HTYHTEGAGG GHAPDIIKIC GELNVLPSST
2kauC     249   tlnesgfved tlaaiggrti htfhtegagg ghapdiitac ahpnilpsst
                                                                      
TARGET                 hhh hhhhh    s ssss             hhhh    sssssss
2kauC                  hhh hhhhh    s ssss                h    sssssss


TARGET    301   NPTRPYTINT LEEHLDMLMV CHHLHRNIPE DVAFAESRIR RETIAAEDIL
2kauC     299   nptlpytlnt idehldmlmv chhldpdiae dvafaesrir retiaaedvl
                                                                      
TARGET          s       hh hhhhhhh                  hhhh    hhhhhhhhhh
2kauC           s       hh hhhhhhh                  hhhh    hhhhhhhhhh


TARGET    351   HDLGAFSIIS SDSQAMGRVG EVICRTWQTA HKMKVQRGQL PGETGNNDNL
2kauC     349   hdlgafslts sdsqamgrvg evilrtwqva hrmkvqrgal aeetgdndnf
                                                                      
TARGET          hhh    sss             hhhhhhhhh hhhhhh             hh
2kauC           hhh    sss             hhhhhhhhh hhhhhh             hh


TARGET    401   RAKRYVAKYT INPAITHGIS EEIGSVEVGK LADLCLWSPA FFGVKPELVI
2kauC     399   rvkryiakyt inpalthgia hevgsievgk ladlvvwspa ffgvkpatvi
                                                                      
TARGET          hhhhhhh     hhhhh              s sssssss           sss
2kauC           hhhhhhh     hhhhhh             s sssssss           sss


TARGET    451   KGGIVAYAQM GDANASIPTP QPVHMQPMFA NYGGAIAATS VTFVSQKAAK
2kauC     449   kggmiaiapm gdinasiptp qpvhyrpmfg algsarhhcr ltflsqaaaa
                                                                      
TARGET          ss sssssss               sssss      hhhhh    sss hhhh 
2kauC           ss sssssss               sssss      hhhhhh   sss hhhh 


TARGET    501   KDIGEKLGLS KPLVAVKNIR QLTKRDLKLN NYLPHIEVDP ETYEVRADGE
2kauC     499   ngvaerlnlr saiavvkgcr tvqkadmvhn slqpnitvda qtyevrvdge
                                                                      
TARGET            hhhhh     sssss                    sssss     sssss s
2kauC             hhhhh     sssss                    sssss     sssss s


TARGET    551   LLTCEPASVL PMAQRYFLF                                  
2kauC     549   litsepadvl pmaqryflf-                                 
                                                                      
TARGET          ss                                                    
2kauC           ss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6e30a86ee1b7a73d5c47f30966a0aad1 on BC2-cluster at Wed Sep  3 19:34:16 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>6e30a86ee1b7a73d5c47f30966a0aad1
**********************************************************************************
>2kauC Evalue:0 SeqID:70.619 Method:BLAST Type:MODEL
-*********************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2kauC          5              569            BLAST          BUILT          

FINISHED PIPELINE ON ID: 6e30a86ee1b7a73d5c47f30966a0aad1 on gopt-78.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 19:35:12 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.