SWISS-MODEL Repository - Model Details

Model Overview
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1
404

Sequence
UniProt P73141
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
tRNA-synt_1b
S4

Model 3D Structure
Model information:
Modelled residue range: 8 to 402
Based on template: [ 1h3e ]  
Sequence Identity [%]: 39%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    8              D WLWRGTAEIF PHNADSNNPQ EHLGILTQQD RPLRVKLGID
1h3eA     6     htpeeal--a llkrgaeeiv pe-------e ellakl-keg rpltvklgad
                                                                      
TARGET                                            hhhhhh      sssssss 
1h3eA             hhhhh  h hhh    sss          h hhhhhh h     sssssss 


TARGET    49    PTGTDIHLGH SIPFRKLRAF QDAGHTAVVI IGDFTAQIGD PTGKSEVRKQ
1h3eA     46    ptrpdlhlgh avvlrkmrqf qelghkvvli igdftgmigd psgrsktrpp
                                                                      
TARGET               ssshh hhhhhhhhhh hh   sssss sshhhhhh             
1h3eA                ssshh hhhhhhhhhh hh   sssss sshhhhhh             


TARGET    99    LTADQVKRNA ESYLAQLKPI LDFDTPGRLE IRYNSEWLSN LDLNKILELL
1h3eA     96    ltleetrena ktyvaqagki lrqe-phlfe lrynsewleg ltfkevvrlt
                                                                      
TARGET            hhhhhhhh hhhhhhhh          sss ss  hhhhh    hhhhhhhh
1h3eA             hhhhhhhh hhhhhhhh          sss ssssh   h    hhhhhh  


TARGET    149   ATMTVGQMLA KEGFAERFQK ENPIFLHEFL YPLMQGYDSV AVNADVELGG
1h3eA     145   slmtvaqmle redfkkryea gipislhell ypfaqaydsv airadvemgg
                                                                      
TARGET          h   hhhhh    hhhhhhhh       hhhh hhhhhhhhhh h   ssssss
1h3eA               hhh    hhhhhhhhhh       hhhh hhhhhhhhhh h   ssssss


TARGET    199   TDQKFNIAVG RDLQRHFGKT PQFGLLLPIL LGTDGQQKMS KSLNNYVGLQ
1h3eA     195   tdqrfnllvg revqraygqs pqvcflmpll vgldgrekms ksldnyiglt
                                                                      
TARGET          s  hhhhhhh hhhhh        sssss  s ss    sss        sss 
1h3eA           s  hhhhhhh hhhhhh       sssss  s ss    sss        sss 


TARGET    249   EDALSMYSKL EKTPDRLLGE YFELLTNLDL AEL----PEN PRECQKLLAK
1h3eA     245   eppeamfkkl mrvpdpllps yfrlltdlee eeieallkag pvpahrvlar
                                                                      
TARGET            hhhhhhhh        hhh hhhh                  hhhhhhhhhh
1h3eA             hhhhhhhh h      hhh hhhh     h hhhhhhhh    hhhhhhhhh


TARGET    295   EVTAQFHGVA GAIAAQKTAE DIV------- ---------- ---------T
1h3eA     295   lltaayalpq ippridrafy eslgyaweaf grdkeagpee vrraearyde
                                                                      
TARGET          hhhhhh           hhhh h                               
1h3eA           hhhhhh           hhhh hh                    hhhhhhhhhh


TARGET    319   QGKAGNTDSV PEFSLAEITF ---PVKLAYL LSASGLCPSS SEGRRQIKGG
1h3eA     345   vakggipeei pevtipasel kegriwvarl ftlagltpsn aearrliqnr
                                                                      
TARGET                                    ssshhh hhhh     h hhhhhhhhh 
1h3eA           hhh          sss          ssshhh hhhh     h hhhhhhhhh 


TARGET    366   AVRLDGDRLE DVNQEYADPK MLINKVLQMG KKKFIRL -- -         
1h3eA     395   glrldgevlt dpmlqvdlsr p---rilqrg kdrfvrvrls d         
                                                                      
TARGET          sssss sss     sss         ssssss   sssss              
1h3eA           sssss sss     sss         ssssss   ssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f5510ed64fec18667626c3ae023fa5c8 on BC2-cluster at Mon Sep  1 02:08:55 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>f5510ed64fec18667626c3ae023fa5c8
*********************************************************************************
>1h3eA Evalue:0 SeqID:39.486 Method:HHSEARCH Type:MODEL
-***-************************************************************************-***


TEMPLATE ID    START          STOP           METHOD         STATUS         
1h3eA          8              402            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f5510ed64fec18667626c3ae023fa5c8 on gopt-60.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 02:12:37 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.