SWISS-MODEL Repository - Model Details

Model Overview
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1
173

Sequence
UniProt P73304
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P73304: 1148.sll1812

Domain
Link to: [ InterPro ]
Ribosomal_S5
Ribosomal_S5_C

Model 3D Structure
Model information:
Modelled residue range: 17 to 172
Based on template: [ 3bbn ]  
Sequence Identity [%]: 60%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    17       WQERVIQ IRRVSKVVKG GKKLSFRAIV VVGNETGQVG VGVGKAGDVI
3bbnE     151   g--feenvvq vrrvtkvvkg gkhmrfraiv vvgdkkgqvg vgvgkakevv
                                                                      
TARGET              sssss                     ss sss   sss          hh
3bbnE                                                  sss           h


TARGET    64    GAVRKGVADG KKQLIEVPLT KSNSITHITN GVSGGAKVVV RPAAPGTGVI
3bbnE     199   savqkaavda rrniitvpmt kyltfphrne adygaarvml rpaapgtgvi
                                                                      
TARGET          hhhhhhhhhh h   sss                                    
3bbnE           hhhhhhhhhh h   sss                                    


TARGET    114   AGGAVRTVLE LAGVKNILAK QLGSNNPLNN ARAAINALET LRTFSEVAEE
3bbnE     249   aggavrtvle magvenalgk qlgsnnalnn arativavqt mrqfsdvard
                                                                      
TARGET            hhhhhhhh h                hhhh hhhhhhhh      h   hhh
3bbnE                hhhhh h                hhhh hhhhhhhh      h   hhh


TARGET    164   RGVSVEHLY                                             
3bbnE     299   rgipmeelwk                                            
                                                                      
TARGET                                                                
3bbnE

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 74eedfbbe539a4cc7c565530bc8f9c5b on BC2-cluster at Sun Aug 31 23:27:15 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>74eedfbbe539a4cc7c565530bc8f9c5b
***************************************************************************************
>3bbnE Evalue:1.5291e-41 SeqID:60.897 Method:BLAST Type:MODEL
--------******************************************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
3bbnE          17             172            BLAST          BUILT          

FINISHED PIPELINE ON ID: 74eedfbbe539a4cc7c565530bc8f9c5b on gopt-69.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 23:27:23 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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