SWISS-MODEL Repository - Model Details

Model Overview
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1
518

Sequence
UniProt P74181
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
G_glu_transpept

Model 3D Structure
Model information:
Modelled residue range: 5 to 306
Based on template: [ 2dbu ]  
Sequence Identity [%]: 30%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    5                           TTGVVAAGHA QTAEAGKCML EEGGNAFDAA
2dbuA     29    appvsygvee dvfhpvra-- kqgxvasvda tatqvgvdil keggnavdaa
                                                                      
TARGET                                         h hhhhhhhhhh hh   hhhhh
2dbuA                                          h hhhhhhhhhh h    hhhhh


TARGET    35    IASVLAACVV ESSLTSLGGG GFLLAQTAAK KSYLFDFFCQ TPQVNPGEKA
2dbuA     77    vavgyalavt hpqagnlggg gfxlirskng nttaidfrex apakatr---
                                                                      
TARGET          hhhhhhhhhh            sssssss    sssssss              
2dbuA           hhhhhhhhhh            sssssss    sssssss              


TARGET    85    VDFYPVALNF GGAWQT--FH IGKGAIAVPG MVAGLFAAHR KLGQLPFKVL
2dbuA     124   -dxfld---d qgnpdskksl tshlasgtpg tvagfslald kygtxplnkv
                                                                      
TARGET             sssss s sssss                 hhhhhhhhhh h      hhh
2dbuA              sss       sss hhh             hhhhhhhhhh h      hhh


TARGET    133   IEPAVAYARQ GFTLNRFN-D FTNGLLEPIL TQQEEGRKFY APQGKILRQG
2dbuA     170   vqpafklard gfivndalad dlktygsevl pnhenskaif wkegeplkkg
                                                                      
TARGET          hhhhhhhhhh  sss        hhhhhh       hhhhhhh           
2dbuA           hhhhhhhhhh  sss hhhhh hhhhhhh       hhhhhhh           


TARGET    182   EKAYLPQFAD VLEQLARHGP DWFYRGELTE WVLESLGEA- SALTAKDWAD
2dbuA     220   dtlvqanlak slexiaengp defykgtiae qiaqexqkng glitkedlaa
                                                                      
TARGET          sss  hhhhh hhhhhh   h hhh   hhhh hhhhhh         hhhhhh
2dbuA           sss  hhhhh hhhhhh   h hhh   hhhh hhhhhhh        hhhhhh


TARGET    231   YQVEIRLPLR AQYRQRQLLT NPPPSAGGIL IAFALQLLEK YDLSQYPLGS
2dbuA     270   ykavertpis gdyrgyqvys xpppssggih ivqilnilen fdxkkygfgs
                                                                      
TARGET             sss  ss sss  sssss       hhhh hhhhhhhhh     hh     
2dbuA              sss  ss sss  sssss       hhhh hhhhhhhhh     hhh    


TARGET    281   AAQIQLFSQV MALSNQARRQ YL-DGNL -- ---------- ----------
2dbuA     320   adaxqixaea ekyayadrse ylgdpdfvkv pwqaltnkay aksiadqidi
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh                                 
2dbuA           hhhhhhhhhh hhhhhhhhhh             hhh   hhh hhhhhh    


TARGET          ---------- --------                                   
2dbuA     370   nkakpsseir pgklapye                                   
                                                                      
TARGET                                                                
2dbuA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d206c0f88fd26b10d80c72539ac2a84d on BC2-cluster at Sat Aug 30 02:20:45 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d206c0f88fd26b10d80c72539ac2a84d
***************************************************************************************
>2dbuA Evalue:0 SeqID:30.293 Method:HHSEARCH Type:MODEL
-**************************************************------------------------------------
>2nlzA Evalue:0 SeqID:24.190 Method:HHSEARCH Type:MODEL
-************-************************************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2dbuA          5              306            HHSEARCH       BUILT          
2nlzA          5              514            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: d206c0f88fd26b10d80c72539ac2a84d on gopt-73.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:25:48 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.