SWISS-MODEL Repository - Model Details

Model Overview
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1
287

Sequence
UniProt P74290
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Fapy_DNA_glyco
zf-FPG_IleRS
H2TH

Model 3D Structure
Model information:
Modelled residue range: 2 to 284
Based on template: [ 1kfv ]  
Sequence Identity [%]: 38%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2     PELPEVETVC RGLNRLTLEQ TIGGGEVLLD RSLAYPVSVE DFQKQITGCR
1kfvA     1     gelpevetvr relekrivgq kiisieatyp rxvl--tgfe qlkkeltgkt
                                                                      
TARGET            hhhhhhhh hhhh     s ss sssss           hh hhhhhh  ss
1kfvA             hhhhhhhh hhhh     s ss sssss           hh hhhhhh  ss


TARGET    52    LVGWQRRGKY LLGELRSNQA PGPAGWLGCH LRMTGQLLWT ERDQQRPRHT
1kfvA     49    iqgisrrgky lifeigd--- ---dfrlish lrxegkyrla tldaprekhd
                                                                      
TARGET          sssssss  s ssssss        sssssss      sssss ss      ss
1kfvA           sssssss  s ssssss        sssssss      sss           ss


TARGET    102   RVVLHFEGGW ELRFVDTRTF GKVWLLPGDR PWAEVMTGLG QLGPEPFGAD
1kfvA     93    hltxkfadg- qliyadvrkf gtwelistdq vlp--yflkk kigpeptyed
                                                                      
TARGET          sssss   ss ssssss      sssssss        hhhhh           
1kfvA           ssssss  s  ssssss      sssssss    hh  hhhhh           


TARGET    152   FTAEYLYEKL KSSRRPLKNA LLDQRLVAGL GNIYADEVLF FCGFHPTMAS
1kfvA     140   fdeklfrekl rkstkkikpy lleqtlvagl gniyvdevlw lakihpeket
                                                                      
TARGET            hhhhhhhh h   ssshhh hh          hhhhhhhhh hh     sss
1kfvA             hhhhhhhh h   ssshhh hh          hhhhhhhhh hh     sss


TARGET    202   NQVSLQDCEL IHQQIQATLT AAIEAGGTSF SDYRQVTGIN GNYGGMAQVY
1kfvA     190   nqliessihl lhdsiieilq kaiklggssi st-------- gkxqnelqvy
                                                                      
TARGET              hhhhhh hhhhhhhhhh hhhhh                           
1kfvA               hhhhhh hhhhhhhhhh hhhhh                           


TARGET    252   GREGEPCRHC GTVIAKIKLG GRSAHFCPQC QPK                  
1kfvA     239   gktgekcsrc gaeiqkikva grgthfcpvc qqk-                 
                                                                      
TARGET              sss     ssssssss   sssss                          
1kfvA               sss     ssssssss   sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 778f7311c3ac2eb3a83ba0f21171d367 on BC2-cluster at Sat Aug 30 04:51:39 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>778f7311c3ac2eb3a83ba0f21171d367
************************************************************************
>1kfvA Evalue:0 SeqID:38.163 Method:HHSEARCH Type:MODEL
*****************-****************************************--***********-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1kfvA          2              284            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 778f7311c3ac2eb3a83ba0f21171d367 on gopt-57.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 04:54:06 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.