SWISS-MODEL Repository - Model Details

Model Overview
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1
143

Sequence
UniProt P74327
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ribonuclease_3

Model 3D Structure
Model information:
Modelled residue range: 21 to 135
Based on template: [ 2gsl ]  
Sequence Identity [%]: 27%
Model date: 2008-08-16
Revision date: 2008-08-16

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-16. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    21          AVQS LSPVALAYLG DAVFELYVRC CYLFPPRRIG DFHRRVVAQV
2gslA     5     dfsk--dird ysglelaflg daiweleirk yylqfgynip tlnkyvkakv
                                                                      
TARGET                       hhhhhhhh hhhhhhhhhh hh      hh hhhhhhh   
2gslA                        hhhhhhhh hhhhhhhhhh hh      hh hhhhhhh   


TARGET    65    RAEQQAQILT TLLPQLTDPE KEWVRRGRNA ATSTSRRANP ELYQAASGLE
2gslA     53    nakyqsliyk kiindldeef kvigkrakni ktf-prsctv xeykeatale
                                                                      
TARGET           hhhhhhhhh h      hhh hhhhhhhhh           h hhhhhhhhhh
2gslA           hhhhhhhhhh h      hhh hhhhhhh             h hhhhhhhhhh


TARGET    115   TLLGYLYLR- DARRLDELLA LI ----                         
2gslA     104   aiigaxyllk keeeikkiin ivikgel                         
                                                                      
TARGET          hhhhhhhh     hhhhhhhh h                               
2gslA           hhhhhhhh     hhhhhhh    hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d38f469b10cc1eedf9e64951614313e0 on BC2-cluster at Sat Aug 16 17:04:55 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d38f469b10cc1eedf9e64951614313e0
************************************************************************
>2gslA Evalue:1.5E-21 SeqID:27.586 Method:HHSEARCH Type:MODEL
----------**********************************************************----


TEMPLATE ID    START          STOP           METHOD         STATUS         
2gslA          21             135            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d38f469b10cc1eedf9e64951614313e0 on gopt-60.cluster.bc2.ch BC2-Cluster at
Sat Aug 16 17:06:07 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.