SWISS-MODEL Repository - Model Details

Model Overview
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1
425

Sequence
UniProt P74565
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P74565: 1148.slr0653

Domain
Link to: [ InterPro ]
Sigma70_r1_2
Sigma70_r3
Sigma70_r2
Sigma70_r4

Model 3D Structure
Model information:
Modelled residue range: 187 to 260
Based on template: [ 1sig ]  
Sequence Identity [%]: 74%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1sigA     113   megeidiakr iedginqvqc svaeypeait ylleqynrve aeearlsdli
                                                                      
                                                       
1sigA              hhhhhhh hhhhhhhhhh hhh   hhhh hhhhhh             ss


                                                       
1sigA     163   tgfvddlapt athvgselsq edldidpela rekfaelraq yvvtrdtika
                                                                      
                                                       
1sigA           ssss                h hh    hhhh hhhhhhhhhh    hh     


                                                       
1sigA     242   hataqeeilk lsevfkqfrl vpkqfdylvn smrvmmdrvr tqerlimklc
                                                                      
                                                       
1sigA            hhhhhhhhh hhhhhhssss shhhhhhhhh hhhhhhhhhh hhhhhhhhhh


                                                       
1sigA     292   veqckmpkkn fitlftgnet sdtwfnaaia mnkpwseklh dvseevhral
                                                                      
                                                       
1sigA           hhh     hh hhhhh        hhhhhhhh     hhh       hhhhhhh


TARGET    187                                       RRAKDKM VQSNLRLVVS
1sigA     342   qklqqieeet gltieqvkdi nrrmsigeak a--rrakkem veanlrlvis
                                                                      
TARGET                                               hhhhhh hh   hhhhh
1sigA           hhhhhhhhhh    hhhhhhh hhhhhhhhhh h  hhhhhhh hh   hhhhh


TARGET    204   IAKKYMNRGL SFQDLIQEGS LGLIRAAEKF DHEKGYKFST YATWWIRQAI
1sigA     390   iakkytnrgl qfldliqegn iglmkavdkf eyrrgykfst yatwwirqai
                                                                      
TARGET          hhh         hhh   hhh hhhhhhhhh         hhh hhhhhhhhhh
1sigA           hhh         hhh   hhh hhhhhhhhh         hhh hhhhhhhhhh


TARGET    254   TRAIADQ                                               
1sigA     440   trsiadq-                                              
                                                                      
TARGET          hhhhhh                                                
1sigA           hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ed62e85be4c0db6969e5f007898df27e on BC2-cluster at Sun Aug 31 17:56:27 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>ed62e85be4c0db6969e5f007898df27e
*************************************************************************************
>1sigA Evalue:4.65815e-24 SeqID:74.324 Method:BLAST Type:MODEL
-------------------------------------***************---------------------------------
>1ttyA Evalue:1.07481e-17 SeqID:69.231 Method:BLAST Type:MODEL
---------------------------------------------------------------------****************
>1rp3A Evalue:1.5E-34 SeqID:23.077 Method:HHSEARCH Type:MODEL
-------------------------------------***************-***********************-******--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1sigA          187            260            BLAST          BUILT          
1ttyA          347            424            BLAST          BUILT          
1rp3A          184            413            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: ed62e85be4c0db6969e5f007898df27e on gopt-80.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 17:59:47 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.