SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
215

Sequence
UniProt P74755
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PRA-CH
PRA-PH

Model 3D Structure
Model information:
Modelled residue range: 16 to 120
Based on template: [ 1zps ]  
Sequence Identity [%]: 49%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    16             K IRYNDQGLVP AIAQDYLDGT VLMLAWMNEA ALAKTLATGQ
1zpsA     8     vnillnf--r hningedlii avaqdhetge vlmvaymnre alrrtletgt
                                                                      
TARGET                             ss ssssss   s sssssss hh hhhhhhhhss
1zpsA                              ss ssssss   s sssssss hh hhhhhhhhss


TARGET    57    VWYWSRSRQE LWHKGATSGH FQKLLGIRYD CDSDALLLTI EQKGDIACHT
1zpsA     56    ahywstsrgk lwlkgessgh vqrvkdvlvd cdgdavvlkv eqegg-acht
                                                                      
TARGET          sssss    s ssss       ssssssssss     ssssss sss       
1zpsA           sssss    s ssss       ssssssssss    sssssss sss       


TARGET    107   GERSCFHQL- DGHKS ---- -------                         
1zpsA     105   gyrscfyrsi dgdelkvred avkvfdp                         
                                                                      
TARGET                                                                
1zpsA           sss   ssss s  sssss    sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f061fb6f6b3cab36b474e99eb8461146 on BC2-cluster at Sat Aug 30 17:08:34 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>f061fb6f6b3cab36b474e99eb8461146
************************************************************************
>1zpsA Evalue:0 SeqID:49.057 Method:HHSEARCH Type:MODEL
-----***********************************--------------------------------
>2a7wA Evalue:5.1E-28 SeqID:38.889 Method:HHSEARCH Type:MODEL
-----------------------------------------*******************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1zpsA          16             120            HHSEARCH       BUILT          
2a7wA          125            214            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f061fb6f6b3cab36b474e99eb8461146 on gopt-53.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 17:10:14 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.