SWISS-MODEL Repository - Model Details

Model Overview
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1
910

Sequence
UniProt P75354
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DnaJ

Model 3D Structure
Model information:
Modelled residue range: 1 to 93
Based on template: [ 2ctw ]  
Sequence Identity [%]: 41%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1                   MAEAKRD YYEVLGLSRD ADDNDIKKAF RKLAKKYHPD
2ctwA     1     gssgssgrqr s--lstsges lyhvlgldkn atsddikksy rklalkyhpd
                                                                      
TARGET                                 hhhh        hhhhhhhh hhhhh     
2ctwA                                  hhhh        hhhhhhhh hhhhh     


TARGET    38    RNK-APDAAQ IFAEINEAND VLSNPKKRAN YDKYGHDGVD NEGGFAFQAD
2ctwA     49    knpdnpeaad kfkeinnaha iltdatkrni ydkygslgly vae--qfgee
                                                                      
TARGET                hhhh hhhhhhhhhh h   hhhhhh hhh   hhhh hh      hh
2ctwA                 hhhh hhhhhhhhhh h   hhhhhh hhh   hhhh hhh  h   h


TARGET    87    VFDSFFE -- ---                                        
2ctwA     97    nvntyfvsgp ssg                                        
                                                                      
TARGET          hhhhhhh                                               
2ctwA              hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e3531a5bdc6824ddb9998970ae0c7fad on BC2-cluster at Sat Aug 30 07:35:05 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>e3531a5bdc6824ddb9998970ae0c7fad
***********************************************************************************
>2ctwA Evalue:6.9E-22 SeqID:41.489 Method:HHSEARCH Type:MODEL
********---------------------------------------------------------------------------
>2qldA Evalue:1.2E-11 SeqID:17.241 Method:HHSEARCH Type:MODEL
----------------------------------------------------------------*************------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ctwA          1              93             HHSEARCH       BUILT          
2qldA          708            849            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: e3531a5bdc6824ddb9998970ae0c7fad on gopt-69.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 07:41:27 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.