SWISS-MODEL Repository - Model Details

Model Overview
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1
264

Sequence
UniProt P77960
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P77960: 1148.slr0966

Domain
Link to: [ InterPro ]
Trp_syntA

Model 3D Structure
Model information:
Modelled residue range: 4 to 263
Based on template: [ 1rd5 ]  
Sequence Identity [%]: 51%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4          VAACF NALRQRGECA LIPFLTAGDP DLATTAEALR ILDRAGADLI
1rd5A     2     srp--vsdtm aalmakgkta fipyitagdp dlattaealr lldgcgadvi
                                                                      
TARGET                hhhh hhhhhh   s sssssss     hhhhhhhhh hhhhh    s
1rd5A                hhhhh hhhhhh   s sssssss     hhhhhhhhh hhhhh    s


TARGET    49    ELGVPYSDPL ADGPVIQAAA TRALQKGVKL DDVLAIVREV HQDIAAPIIL
1rd5A     50    elgvpcsdpy idgpiiqasv aralasgttm davlemlrev tpelscpvvl
                                                                      
TARGET          ssss          hhhhhhh hhhhh    h hhhhhhhhhh hh    ssss
1rd5A           ssss          hhhhhhh hhhhh    h hhhhhhhhhh hh    ssss


TARGET    99    FTYYNPIFYQ GVEVFLDKIK AAGVKGLVVP DLPLEESDRL LEATAERGLE
1rd5A     100   lsyykpimfr s----lakmk eagvhglivp dlpyvaahsl wseaknnnle
                                                                      
TARGET          ss     hhh h     hhhh hh  ssss         hhhh hhhhhhh  s
1rd5A           ss  hhhh         hhhh h   ssss      h   hhh hhhhhhh  s


TARGET    149   LILLVAPTSS PERQTAIAKK SQGFVYLVSV TGVTGVRTEV GSRVEALLAG
1rd5A     146   lvllttpaip edrmkeitka segfvylvsv ngvtgpranv nprvesliqe
                                                                      
TARGET          sssss      hhhhhhhhhh     ssss     sss   ss s hhhhhhhh
1rd5A           sssss      hhhhhhhhhh     ssss     sss   ss s hhhhhhhh


TARGET    199   MRQVTDKPIG VGFGISQPEQ AEQVKAWGAD AVIVGSAMVK RLAEG-TPTE
1rd5A     196   vkkvtnkpva vgfgiskpeh vkqiaqwgad gviigsamvr qlgeaaspkq
                                                                      
TARGET          hhh    sss ss     hhh hhhhhh   s ssss hhhhh hhh    hhh
1rd5A           hhh    sss ss     hhh hhhhhh   s ssss hhhhh hhh    hhh


TARGET    248   GLQALETFCR ELKTAI                                     
1rd5A     246   glrrleeyar gmknalg                                    
                                                                      
TARGET          hhhhhhhhhh hhhhhh                                     
1rd5A           hhhhhhhhhh hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 0b609c1b1794912b70369ce7521f9026 on BC2-cluster at Mon Sep  1 06:16:06 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>0b609c1b1794912b70369ce7521f9026
****************************************************************************************
>1rd5A Evalue:0 SeqID:51.341 Method:HHSEARCH Type:MODEL
-***********************************--**************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1rd5A          4              263            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 0b609c1b1794912b70369ce7521f9026 on gopt-52.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 06:19:17 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.