SWISS-MODEL Repository - Model Details

Model Overview
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1
125

Sequence
UniProt P83468
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ocnus

Model 3D Structure
Model information:
Modelled residue range: 1 to 125
Based on template: [ 2ozx ]  
Sequence Identity [%]: 84%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MAAAGLAQ IPDVDIDSDG VFKYVLIRVH AAPPSEAPGG ESKDIVRGYK
2ozxA     1       mavadlal ipdvdidsdg vfkyvlirvh saprsgapaa eskeivrgyk
                                                                      
TARGET                         sss  s ssssssssss ss         ssssssss  
2ozxA                          sss  s ssssssssss ss         ssssssss  


TARGET    49    WAEYHADIYD KVSGELQKKG HDCECLGGGR ISHQSQDRKI HVYGYSMGYG
2ozxA     49    waeyhadiyd kvsgdmqkqg cdceclgggr ishqsqdkki hvygysmayg
                                                                      
TARGET               hhhhh hhhhhhhhhs ssssssssss sss        sss       
2ozxA                hhhhh hhhhhhhhhs ssssssssss sss        sss       


TARGET    99    RAQHSVSTEK IRAKYPDYEV TWADDGY                         
2ozxA     99    paqhaistek ikakypdyev twandgy-                        
                                                                      
TARGET              hhhhhh hhhh                                       
2ozxA               hhhhhh hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: a9f6d876d79b3c6f4a330b1444333e90 on BC2-cluster at Sun Aug 31 00:39:25 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>a9f6d876d79b3c6f4a330b1444333e90
***************************************************************
>2ozxA Evalue:2.36326e-53 SeqID:84.000 Method:BLAST Type:MODEL
***************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ozxA          1              125            BLAST          BUILT          

FINISHED PIPELINE ON ID: a9f6d876d79b3c6f4a330b1444333e90 on gopt-35.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 00:39:41 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.