SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | P96329 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2010-12-20. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 26 GFGNIAE NISRSILTLP LEASNVVGIE GAWGSGKTSL LNLILRNLAL
1rz3A 2 x--elrdrid flcktilaik tagrlvlgid glsrsgkttl anqlsqtlre
TARGET hhhhhh hhhhhhh hhhh hhhhhhhhhh
1rz3A hhhhhh hhhhhhh ssssss hhhh hhhhhhhhhh
TARGET 73 KKDAHTHVLH ISPWLS --- ---------- ---------- ----------
1rz3A 49 qg-isvcvfh xddhiverak ryhtgneewf eyyylqwdve wlthqlfrql
TARGET
1rz3A h ssssss s hhh hhhhh hh hhhh hhh
TARGET ---------- ---------- ---------- ---------- ----------
1rz3A 98 kashqltlpf ydhetdthsk rtvylsdsdx ixiegvflqr kewrpffdfv
TARGET
1rz3A sssssss ss ssss sssss ss sssss hhhhh ss
TARGET ---------- ---------- ---------- -------
1rz3A 148 vyldcpniqk finrywkaed yyleteepik radvvfd
TARGET
1rz3A ssss hhh hhhhhhhhhh hhhhh hh h sss
no data available!
no data available!
Template Selection
- Start SMR-Pipeline for:7fc38ed3a635cde5bee8e0b37cc9e1c5 on BC2-cluster at Tue Dec 21 14:13:14
2010
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old4 vs new:3): model based on new templates
- Send 3 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *******
- building model based on 1rz3A (26-88) was successful
- *******************************
- building model based on 1iqpA (2-284) was not successful go to next best template
- ************************************
- building model based on 3pfiA (20-349) was not successful go to next best template
- ***********************************
- building model based on 1in5A (20-343) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:7fc38ed3a635cde5bee8e0b37cc9e1c5 on BC2-cluster at Tue Dec 21 14:14:23
2010
Template Search
| Template Description |
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1rz3: Not available |
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3iza: Not available |
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1lv7: Not available |
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3h4m: Not available |
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3pfi: Not available |
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1iqp: Not available |
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1in5: Not available |
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1ksf: Not available |
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2qby: Not available |
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1w5s: Not available |
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2qen: Not available |
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2v1u: Not available |
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2chq: Not available |
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1fnn: Not available |
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2fna: Not available |
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1jbk: Not available |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.