SWISS-MODEL Repository - Model Details

Model Overview
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1
536

Sequence
UniProt Q01064
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q01064: 9606.ENSP0000024

Domain
Link to: [ InterPro ]
PDEase_I
PDEase_I_N

Model 3D Structure
Model information:
Modelled residue range: 151 to 502
Based on template: [ 4npv ]  
Sequence Identity [%]: 91%
Model date: 2015-05-29
Revision date: 2015-05-28

Quaternary structure information: [details]
Template (4npv): MONOMER
Model: MONOMER

Ligand information: [details]
Ligands in the template: 0NK: 1, MG: 1, ZN: 1.
Ligands in the model: ZN: 1
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1       STAVLNCL KNLDLWCFDV FSLNQAADDH ALRTIVFELL TRHNLISRFK
4npv_1#1  151     stavlncl knldlwcfdv fslnqaaddh alrtivfell trhnlisrfk
                                                                      
TARGET             hhhhhhh          h hhhhhhh    hhhhhhhhhh h   hhhhh 
4npv_1#1           hhhhhhh          h hhhhhhh    hhhhhhhhhh h   hhhhh 


TARGET    49    IPTVFLMSFL DALETGYGKY KNPYHNQIHA ADVTQTVHCF LLRTGMVHCL
4npv_1#1  199   iptvflmsfl daletgygky knpyhnqiha advtqtvhcf llrtgmvhcl
                                                                      
TARGET            hhhhhhhh hhhhhhhhh         hhh hhhhhhhhhh hhhh      
4npv_1#1          hhhhhhhh hhhhhhhhh         hhh hhhhhhhhhh hhh   hh  


TARGET    99    SEIELLAIIF AAAIHDYEHT GTTNSFHIQT KSECAIVYND RSVLENHHIS
4npv_1#1  249   seiellaiif aaaihdyeht gttnsfhiqt ksecaivynd rsvlenhhis
                                                                      
TARGET           hhhhhhhhh hhhh          hhhhh    hhhhhhh     hhhhhhhh
4npv_1#1         hhhhhhhhh hhhh          hhhhh    hhhhhhh     hhhhhhhh


TARGET    149   SVFRLMQDDE MNIFINLTKD EFVELRALVI EMVLATDMSC HFQQVKTMKT
4npv_1#1  299   svfrlmqdde mnifinltkd efvelralvi emvlatdmsc hfqqvktmkt
                                                                      
TARGET          hhhhhh             hh hhhhhhhhhh hhhhh       hhhhhhhhh
4npv_1#1        hhhhhh        hh   hh hhhhhhhhhh hhhhh   hh hhhhhhhhhh


TARGET    199   ALQQLERIDK PKALSLLLHA ADISHPTKQW LVHSRWTKAL MEEFFRQGDK
4npv_1#1  349   alqqleridk pkalslllha adishptkqw lvhsrwtkal meeffrqgdk
                                                                      
TARGET          hhh      h hhhhhhhhhh h   hh   h hhhhhhhhhh hhhhhhhhhh
4npv_1#1        hhh      h hhhhhhhhhh h   hh   h hhhhhhhhhh hhhhhhhhhh


TARGET    249   EAELGLPFSP LCDRTSTLVA QSQIGFIDFI VEPTFSVLTD VAEKSVQPLA
4npv_1#1  399   eaelglpfsp lcdrtstlva qsqigfidfi veptfsvltd vaeksvqp--
                                                                      
TARGET          hhhh                h hhhhhhhhhh hhhhhhhhhh hhhh    hh
4npv_1#1        hhhh                h hhhhhhhhhh hhhhhhhhhh hhhh      


TARGET    299   DEDSKSKNQP SFQWRQPSLD VEVGDPNPDV VSFRSTWVKR IQENKQKWKE
4npv_1#1  476   ---------- ---------- -------pdv vsfrstwvkr iqenkqkwke
                                                                      
TARGET          hhhhhhhhhh hhhhh               h hhhhhhhhhh hhhhhhhhhh
4npv_1#1                                       h hhhhhhhhhh hhhhhhhhhh


TARGET    349   RAAS                                                  
4npv_1#1  499   raas-                                                 
                                                                      
TARGET          hh                                                    
4npv_1#1        hh                                                    



Quality


Template's ligands section
Ligands in the template: 0NK: 1, MG: 1, ZN: 1.
Ligands in the template that will be assessed: MG2, ZN3.
Model's ligands section
MG2
The ligand binds less than 3 template residues.
Given the properties calculated previously, the ligand z.MG2 will not be included in the final model.
MG2: conservation:False, RMSD:False, included: False

ZN3
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.050
Given the properties calculated previously, the ligand z.ZN3 will be included in the final model.
ZN3: conservation:True, RMSD:True, included: True

The new model with the included ligands was saved successfully.


Quaternary Structure Annotation of the Template
4npv is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 4npv.pdb1.gz

Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER)
The corresponding reliability score is 0.578 (>0.5 indicates similarity)
Model was succesfully built as MONOMER.


Template Selection
 - Start SMR-Pipeline for:5b8da34458173e3f3cd5c0b538008767 on BC2-cluster at Fri May 29 18:40:52
2015 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with C found
 - No template with D found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                        *****************************************************
 - building model based on 4npvA (151-502) was successful 
 -            ****************************************************************
 - building model based on 3g45A (73-501) was successful 
 -      *********************************************************************
 - building model based on 4wziB (36-499) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:5b8da34458173e3f3cd5c0b538008767 on BC2-cluster at Fri May 29 18:50:04
2015 




Template Description
Match Chain SeqId

4npv: CRYSTAL STRUCTURE OF HUMAN PDE1B BOUND TO INHIBITOR 7A (6,TRIMETHOXY-N-(PENTAN-3-YL)QUINAZOLIN-4-AMINE)
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-502 4npvA 92%
[Model]

4npw: CRYSTAL STRUCTURE OF HUMAN PDE1B BOUND TO INHIBITOR 19A (7DIMETHOXY-N-[(2S)-1-(3-METHYL-1H-PYRAZOL-5-YL)PROPAN-2-YL4-AMINE)
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

150-502 4npwA 91%
[Model]

1taz: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 1B
Solved by: X-RAY, Resolution: 1.77A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-502 1tazA 90%
[Model]

1xor: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ZARDAVERINE
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xorA 34%
[Model]
153-501 1xorB 33%
[Model]

1tb7: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH AMP
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-499 1tb7A 34%
[Model]
152-499 1tb7B 33%
[Model]

1xoq: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xoqA 33%
[Model]
153-499 1xoqB 34%
[Model]

1xom: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH CILOMILAST
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xomA 33%
[Model]
152-499 1xomB 34%
[Model]

3sl4: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 3sl4A 33%
[Model]
153-501 3sl4B 33%
[Model]
153-499 3sl4C 34%
[Model]
153-499 3sl4D 34%
[Model]

3iak: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D (PDE4D) WIPAPAVERINE.
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-498 3iakA 34%
[Model]

1xon: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH PICLAMILAST
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-499 1xonA 34%
[Model]
152-499 1xonB 33%
[Model]

1y2b: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL EST
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2bA 33%
[Model]
153-499 1y2bB 34%
[Model]

1tbb: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH ROLIPRAM
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1tbbA 34%
[Model]
153-501 1tbbB 33%
[Model]

3sl6: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 3sl6A 33%
[Model]
153-501 3sl6B 33%
[Model]
153-499 3sl6C 34%
[Model]
153-499 3sl6D 34%
[Model]

1y2e: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 1-(4-AMINO-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2eA 33%
[Model]
152-499 1y2eB 34%
[Model]

1y2k: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2kA 33%
[Model]
153-499 1y2kB 34%
[Model]

4w1o: PDE4D COMPLEXED WITH INHIBITOR
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

154-499 4w1oB 34%
[Model]
154-499 4w1oD 34%
[Model]
153-499 4w1oC 34%
[Model]
154-499 4w1oA 34%
[Model]

3g4i: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH D1558
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

147-501 3g4iA 33%
[Model]
153-501 3g4iB 33%
[Model]
153-501 3g4iC 33%
[Model]
153-501 3g4iD 33%
[Model]

2qyl: CRYSTAL STRUCTURE OF PDE4B2B IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-499 2qylA 33%
[Model]

3sl3: CRYSTAL STRUCTURE OF THE APO FORM OF THE CATALYTIC DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-498 3sl3A 33%
[Model]
154-499 3sl3B 34%
[Model]
153-499 3sl3C 34%
[Model]
153-499 3sl3D 34%
[Model]

4ogb: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

154-501 4ogbB 33%
[Model]
153-499 4ogbD 34%
[Model]
153-499 4ogbC 34%
[Model]
152-499 4ogbA 33%
[Model]

1y2h: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH 1-(2-CHLORO-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2hA 33%
[Model]
152-499 1y2hB 33%
[Model]

3g4l: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-499 3g4lA 34%
[Model]
153-501 3g4lB 33%
[Model]
152-499 3g4lC 33%
[Model]
153-501 3g4lD 33%
[Model]

3g4k: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH ROLIPRAM
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

147-499 3g4kA 33%
[Model]
153-501 3g4kB 33%
[Model]
153-501 3g4kC 33%
[Model]
153-501 3g4kD 33%
[Model]

3o0j: PDE4B IN COMPLEX WITH LIGAND AN2898
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 3o0jA 33%
[Model]

1y2j: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2jA 33%
[Model]
152-499 1y2jB 33%
[Model]

2pw3: STRUCTURE OF THE PDE4D-CAMP COMPLEX
Solved by: X-RAY, Resolution: 1.56A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 2pw3B 33%
[Model]
153-501 2pw3A 33%
[Model]

3i8v: CRYSTAL STRUCTURE OF HUMAN PDE4A WITH 4-(3-BUTOXY-4- METHOXYPHENYL)METHYL-2-IMIDAZOLIDONE
Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

145-499 3i8vA 32%
[Model]
152-499 3i8vB 33%
[Model]

1q9m: THREE DIMENSIONAL STRUCTURES OF PDE4D IN COMPLEX WITH ROLIPRAMS AND IMPLICATION ON INHIBITOR SELECTIVITY
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 1q9mA 33%
[Model]
153-501 1q9mD 33%
[Model]
154-501 1q9mC 33%
[Model]
153-501 1q9mB 33%
[Model]

3ly2: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX COUMARIN-BASED INHIBITOR
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

150-499 3ly2A 32%
[Model]
150-499 3ly2B 32%
[Model]
147-502 3ly2C 32%
[Model]
152-499 3ly2D 33%
[Model]
152-499 3ly2E 33%
[Model]
152-502 3ly2F 32%
[Model]
147-502 3ly2G 32%
[Model]
147-502 3ly2H 32%
[Model]

1xlx: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH CILOMILAST
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xlxA 33%
[Model]
152-499 1xlxB 33%
[Model]

2qyn: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 2qynB 33%
[Model]
152-499 2qynA 33%
[Model]

1xot: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH VARDENAFIL
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xotA 33%
[Model]
152-499 1xotB 33%
[Model]

3g4g: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH REGULATORY DOMAIN AND D155871
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-502 3g4gA 33%
[Model]
150-501 3g4gB 33%
[Model]
152-503 3g4gC 33%
[Model]
151-501 3g4gD 33%
[Model]

1zkn: STRUCTURE OF PDE4D2-IBMX
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 1zknA 33%
[Model]
153-501 1zknD 33%
[Model]
154-501 1zknC 33%
[Model]
153-501 1zknB 33%
[Model]

2fm5: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH INHIBITOR L- 869299
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 2fm5A 33%
[Model]
153-501 2fm5D 33%
[Model]
153-501 2fm5C 33%
[Model]
153-501 2fm5B 33%
[Model]

1xmy: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xmyA 33%
[Model]
152-499 1xmyB 33%
[Model]

1mkd: CRYSTAL STRUCTURE OF PDE4D CATALYTIC DOMAIN AND ZARDAVERINCOMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-502 1mkdJ 33%
[Model]
153-502 1mkdB 33%
[Model]
153-502 1mkdI 33%
[Model]
153-502 1mkdE 33%
[Model]
153-502 1mkdA 33%
[Model]
153-502 1mkdH 33%
[Model]
153-502 1mkdG 33%
[Model]
153-502 1mkdC 33%
[Model]
153-502 1mkdF 33%
[Model]
153-502 1mkdL 33%
[Model]
153-502 1mkdD 33%
[Model]
153-502 1mkdK 33%
[Model]

1tb5: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH AMP
Solved by: X-RAY, Resolution: 2.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1tb5A 33%
[Model]
152-499 1tb5B 33%
[Model]

1ptw: THE CRYSTAL STRUCTURE OF AMP-BOUND PDE4 SUGGESTS A MECHANISM FOR PHOSPHODIESTERASE CATALYSIS
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 1ptwD 33%
[Model]
153-501 1ptwA 33%
[Model]
153-501 1ptwC 33%
[Model]
153-501 1ptwB 33%
[Model]

3sl5: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 COMPLECOMPOUND 10D
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 3sl5A 33%
[Model]
153-501 3sl5B 33%
[Model]
153-499 3sl5C 34%
[Model]
153-499 3sl5D 34%
[Model]

1xlz: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH FILAMINAST
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xlzA 33%
[Model]
152-499 1xlzB 33%
[Model]

4wcu: PDE4 COMPLEXED WITH INHIBITOR
Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

154-503 4wcuC 34%
[Model]
154-503 4wcuA 33%
[Model]
154-503 4wcuD 33%
[Model]
153-503 4wcuB 33%
[Model]

1y2d: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 1-(4-METHOXY-PHENYL)-3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2dA 33%
[Model]
152-499 1y2dB 33%
[Model]

1xn0: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R,S)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.31A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xn0A 33%
[Model]
152-499 1xn0B 33%
[Model]

1y2c: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5-DIMETHYL-1-PHENYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1y2cA 33%
[Model]
152-499 1y2cB 33%
[Model]

1oyn: CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH (R,S)-ROLIPRAM
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 1oynA 33%
[Model]
153-501 1oynD 33%
[Model]
153-501 1oynB 33%
[Model]
153-501 1oynC 33%
[Model]

3tvx: THE STRUCTURE OF PDE4A WITH PENTOXIFYLLINE AT 2.84A RESOLU
Solved by: X-RAY, Resolution: 2.84A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-499 3tvxA 33%
[Model]
151-499 3tvxB 33%
[Model]

2fm0: CRYSTAL STRUCTURE OF PDE4D IN COMPLEX WITH L-869298
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

153-501 2fm0D 33%
[Model]
153-501 2fm0A 33%
[Model]
153-501 2fm0C 33%
[Model]
153-501 2fm0B 33%
[Model]

2qyk: CRYSTAL STRUCTURE OF PDE4A10 IN COMPLEX WITH INHIBITOR NPV
Solved by: X-RAY, Resolution: 2.84A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-499 2qykA 33%
[Model]
151-499 2qykB 33%
[Model]

3g58: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH D155988/PMNPQ
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-502 3g58A 33%
[Model]
153-501 3g58B 33%
[Model]
153-501 3g58C 33%
[Model]
152-505 3g58D 33%
[Model]

3iad: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4D WITH BOUNDALLOSTERIC MODULATOR
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

154-502 3iadA 33%
[Model]
152-504 3iadB 33%
[Model]
152-503 3iadC 33%
[Model]
153-505 3iadD 33%
[Model]

1xmu: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH ROFLUMILAST
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-499 1xmuA 32%
[Model]
152-499 1xmuB 33%
[Model]

4kp6: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4B (PDE4B) INWITH A [1,3,5]TRIAZINE DERIVATIVE
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 4kp6A 33%
[Model]

1xos: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH SILDENAFIL
Solved by: X-RAY, Resolution: 2.28A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xosA 33%
[Model]

3sl8: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH C
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 3sl8A 33%
[Model]
153-501 3sl8B 33%
[Model]
153-498 3sl8C 34%
[Model]
153-499 3sl8D 34%
[Model]

3k4s: THE STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN PDE4D WITH (3-BUTOXY-4-METHOXYPHENYL)METHYL-2-IMIDAZOLIDONE
Solved by: X-RAY, Resolution: 2.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-501 3k4sA 33%
[Model]

1xm4: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH PICLAMILAST
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-499 1xm4A 33%
[Model]
152-499 1xm4B 33%
[Model]

3v9b: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH ([1-(3-CYCLOPROPYLMETHOXY-4-DIFLUOROMETHOXYPHENYL)-2-(1-OXYL)-ETHYL]-1H-PYRAZL-3-YL}PHENYL)ACETAMIDE
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

147-501 3v9bA 33%
[Model]
153-501 3v9bB 33%
[Model]
153-501 3v9bC 33%
[Model]
153-501 3v9bD 33%
[Model]

3o57: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEHETEROCYCLE PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-502 3o57A 32%
[Model]

4nw7: PDE4 CATALYTIC DOMAIN
Solved by: X-RAY, Resolution: 2.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

150-503 4nw7A 32%
[Model]

1ro9: CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH 8-BR-AMP
Solved by: X-RAY, Resolution: 2.13A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-503 1ro9A 32%
[Model]
144-502 1ro9B 32%
[Model]

1ro6: CRYSTAL STRUCTURE OF PDE4B2B COMPLEXED WITH ROLIPRAM (R &
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-503 1ro6A 32%
[Model]
144-503 1ro6B 32%
[Model]

1f0j: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B
Solved by: X-RAY, Resolution: 2.13A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-507 1f0jA 32%
[Model]
144-502 1f0jB 32%
[Model]

4myq: SELECTIVE INHIBITION OF THE CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B WITH A-33
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

151-505 4myqA 32%
[Model]

3w5e: CRYSTAL STRUCTURE OF PHOSPHODIESTERASE 4B IN COMPLEX WITH
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-503 3w5eA 32%
[Model]
146-503 3w5eB 32%
[Model]

4wzi: CRYSTAL STRUCTURE OF CROSSLINK STABILIZED LONG-FORM PDE4B
Solved by: X-RAY, Resolution: 2.58A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

36-499 4wziB 27%
[Model]
148-499 4wziA 32%
[Model]

3kkt: CRYSTAL STRUCTURE OF HUMAN PDE4B WITH 5-[3-[(1S,2S,4R)- BICYCLO[2.2.1]HEPT-2-YLOXY]-4-METHOXYP HENYL]TETRAHYDRO- 2(1H)-PYRIMIDINONE REVEALS ORDERING OF THE C-TERMINAL HELRESIDUES 502-509.
Solved by: X-RAY, Resolution: 2.48A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-502 3kktA 32%
[Model]
146-503 3kktB 32%
[Model]

1ror: CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH AMP
Solved by: X-RAY, Resolution: 2.13A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-503 1rorA 32%
[Model]
144-502 1rorB 32%
[Model]

3d3p: CRYSTAL STRUCTURE OF PDE4B CATALYTIC DOMAIN IN COMPLEX WITA PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-502 3d3pA 32%
[Model]

3o56: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEHETEROCYCLE PYRAZOLOPYRIDINE INHIBITOR
Solved by: X-RAY, Resolution: 2.42A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-502 3o56A 32%
[Model]

4x0f: CRYSTAL STRUCTURE OF CROSSLINK STABILIZED LONG-FORM PDE4B WITH (R)-(-)-ROLIPRAM
Solved by: X-RAY, Resolution: 3.22A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-499 4x0fB 32%
[Model]
148-499 4x0fA 32%
[Model]

3wd9: CRYSTAL STRUCTURE OF PHOSPHODIESTERASE 4B IN COMPLEX WITH
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-503 3wd9A 32%
[Model]
146-503 3wd9B 32%
[Model]

3gwt: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEWITH A QUINOLINE INHIBITOR
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-502 3gwtA 32%
[Model]

1xm6: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B IN COMPLEX WITH (R)-MESOPRAM
Solved by: X-RAY, Resolution: 1.92A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

152-501 1xm6A 32%
[Model]
152-503 1xm6B 32%
[Model]

3frg: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLEWITH A QUINOLINE INHIBITOR
Solved by: X-RAY, Resolution: 2.42A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-502 3frgA 32%
[Model]

3hmv: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B IN COMPLETETRAHYDROBENZOTHIOPHENE INHIBITOR
Solved by: X-RAY, Resolution: 2.23A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

144-506 3hmvA 31%
[Model]
144-506 3hmvB 31%
[Model]

3g45: CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4B WITH REGULATORY DOMAIN AND D155988
Solved by: X-RAY, Resolution: 2.63A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

73-501 3g45B 29%
[Model]
73-501 3g45A 29%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.