SWISS-MODEL Repository - Model Details

Model Overview
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1
609

Sequence
UniProt Q01588
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
tRNA_anti
Rep-A_N
Rep_fac-A_C

Model 3D Structure
Model information:
Modelled residue range: 173 to 417
Based on template: [ 1fgu ]  
Sequence Identity [%]: 77%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    173      SKVVPIA SLNPYQSKWT VRARVTNKGQ IRTWSNSRGE GKLFSIEMVD
1fguA     181   m--skvvpia sltpyqskwt icarvtnksq irtwsnsrge gklfslelvd
                                                                      
TARGET                             ss sssssssss   sssss  ss ssssssssss
1fguA                                 sssssssss   sssss  ss ssssssssss


TARGET    220   ESGEIRATAF NEQADKFFSI IEVNKVYYFS KGTLKIANKQ YTSVKNDYEM
1fguA     229   esgeirataf neqvdkffpl ievnkvyyfs kgtlkiankq ftavkndyem
                                                                      
TARGET            ssssssss s hhhhhhhh     ssssss s sssss          ssss
1fguA             ssssssss s hhhhhhhh     ssssss   sssss          ssss


TARGET    270   TFNSETSVIP CDDSADVPMV QFEFVSIGEL ESKNKDTVLD IIGVCKNVEE
1fguA     279   tfnnetsvmp ceddhhlptv qfdftgiddl enkskdslvd iigicksyed
                                                                      
TARGET          ss    sss                        h     ssss sssssssss 
1fguA           ss    sss                        h     ssss sssssssss 


TARGET    320   VTKVTIKSNN REVSKRSIHL MDSSGKVVST TLWGEDADKF DGSRQPVVAI
1fguA     329   atkitvrsnn revakrniyl mdtsgkvvta tlwgedadkf dgsrqpvlai
                                                                      
TARGET           sssss     ssssssssss s      sss sssshhhhh       sssss
1fguA            sssss     ssssssssss s      sss sssshhhhh       sssss


TARGET    370   KGARLSDFGG RSLSVLSSST VMINPDIPEA FKLRAWFDSE GQVVEGTS  
1fguA     379   kgarvsdfgg rslsvlssst iianpdipea yklrgwfdae gqaldgvs- 
                                                                      
TARGET          ssssssss s sssss    s ssss   hhh hhhhhhhhh            
1fguA           ssssssss s sssss    s ssss   hhh hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3dce443b5b1060bf12bf2a37f82b841b on BC2-cluster at Sun Aug 31 17:31:15 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  3 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>3dce443b5b1060bf12bf2a37f82b841b
*****************************************************************************
>1fguA Evalue:4.24656e-113 SeqID:77.551 Method:BLAST Type:MODEL
---------------------*******************************-------------------------
>1l1oC Evalue:1.72619e-81 SeqID:77.273 Method:BLAST Type:MODEL
------------------------------------------------------**********************-
>2b29A Evalue:8.44533e-44 SeqID:74.359 Method:BLAST Type:MODEL
***************--------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1fguA          173            417            BLAST          BUILT          
1l1oC          430            605            BLAST          BUILT          
2b29A          5              120            BLAST          BUILT          

FINISHED PIPELINE ON ID: 3dce443b5b1060bf12bf2a37f82b841b on gopt-58.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 17:35:48 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.