Template Description
4ern: CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN XPB/EREXCISION REPAIR PROTEIN AT 1.80 A Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
2fwr: STRUCTURE OF ARCHAEOGLOBUS FULGIDIS XPB Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
294-689
2fwrD
23%
>target
---------------------------------------EVIQKRCIEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS----------------------------KKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS
>2fwrD
MIAEIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFVDNA------ADPIPTPYFDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEE---YVGEFSGRIKE---LKPLTVSTYDSAYV-----------NAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDS-LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITKIVMASGYAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGIDVPDANVGVIMSG-SGSAREYIQRLGRILRPSKGK----KEAVLYELISRGTGEVNTA
[Model]
289-683
2fwrA
23%
>target
----------------------------------AQEKIEVIQKRCIEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKK---------------------------------------MLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT-
>2fwrA
MIAEIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFVDN------AADPIPTPYFDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEE---YVGEFSGRIKEL---KPLTVSTYDSAYV-----------NAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAG-KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGK----KEAVLYELISRGTG
[Model]
292-682
2fwrB
23%
>target
---------------------------------------KIEVIQKRCIEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKM------------------------------LLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD
>2fwrB
MQMIAEIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFV------DNAADPIPTPYFDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGE---EYVGEFSGRIKELK---PLTVSTYDSAYV-----------NAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGK---HKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITRRAEDFNKIVMYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGK----KEAVLYELISRG
[Model]
292-682
2fwrC
24%
>target
-------------------------------------KIEVIQKRCIEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKM---------------------LLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD
>2fwrC
MIAEIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFVDN------AADPIPTPYFDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEE---YVGEFSGRIKE---LKPLTVSTYDSAYV-----------NAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLA-GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITRAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGK----KEAVLYELISRG
[Model]
2fzl: STRUCTURE OF C-TERMINAL DOMAIN OF ARCHAEOGLOBUS FULGIDUS X Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
517-682
2fzlA
24%
>target
YIARVQCAEVWCPMSPEFYREYLTTKTSKKML---------------------------------------LYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD
>2fzlA
HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR-TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG-SAREYIQRLGRILRPSKGK----KEAVLYELISRG
[Model]
1z5z: SULFOLOBUS SOLFATARICUS SWI2/SNF2 ATPASE C-TERMINAL DOMAIN Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
524-690
1z5zA
19%
>target
---AEVWCPMSPEFYREYLTTKTS-------------K--------KMLLYVM-------------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM----N--KPFIYGPTSQNERIQILQNFKFNSKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR---------------------------------------
>1z5zA
KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA--------------------VENVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGGY
[Model]
554-690
1z5zB
22%
>target
--------------------------------------------------------------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM----N--KPFIYGPTSQNERIQILQNFKFNSKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR------------------------------------
>1z5zB
DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA--------------------VENVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSV
[Model]
2fz4: CRYSTAL STRUCTURE OF THE N-TERMINAL HALF OF ARCHAEOGLOBUS FULGIDUS XPB Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
286-487
2fz4A
21%
>target
------------------------------FEVAQEKIEVIQKRCIEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLL
>2fz4A
IAEIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFVDN------AADPIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEE---YVGEFSGRIKEL---KPLTVSTYDSAYV----------NAEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFE
[Model]
4db4: MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO A CHIMAERIC RN Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
570-666
4db4A
20%
>target
-------------------------------RGDKTIVFSDNVFALKHYAIKMN------KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA--------------------------------------------------------------------------------------------------------------------------
>4db4A
SIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
570-666
4db4B
20%
>target
-------------------------------RGDKTIVFSDNVFALKHYAIKMN------KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA--------------------------------------------------------------------------------------------------------------------------
>4db4B
SIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
3eaq: NOVEL DIMERIZATION MOTIF IN THE DEAD BOX RNA HELICASE HERAFORM 2, COMPLETE DIMER, SYMMETRIC Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-681
3eaqB
18%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ---------------------------------------------------------------------------
>3eaqB
VTYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRLP-DRAEAYQHRSGRTGRAGRGG-------RVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL
[Model]
553-663
3eaqA
19%
>target
-----------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK------------------------------------------------------------------------------------
>3eaqA
VTYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRLPD-RAEAYQHRSGRTGRAGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL
[Model]
3eas: NOVEL DIMERIZATION MOTIF IN THE DEAD BOX RNA HELICASE HERAFORM 1, COMPLETE DIMER, ASYMMETRIC Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-664
3easA
19%
>target
----------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK------------------------------------------------------------------------------------
>3easA
YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRLP-DRAEAYQHRSGRTGRARGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL
[Model]
554-681
3easB
18%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ---------------------------------------------------------------------------
>3easB
VTYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRLP-DRAEAYQHRSGRTGRAGRGG-------RVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL
[Model]
3ear: NOVEL DIMERIZATION MOTIF IN THE DEAD BOX RNA HELICASE HERAFORM 1, PARTIAL DIMER Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-662
3earA
18%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA------------------------------------------------------------------------------------
>3earA
VTYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRLPD-RAEAYQHRSGRTGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL
[Model]
1z63: SULFOLOBUS SOLFATARICUS SWI2/SNF2 ATPASE CORE IN COMPLEX WITH DSDNA Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-690
1z63A
18%
>target
---------AAVLRPYQEKSLRKMFGNG-RARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQSHCKLGLTATLLREDDKIADLNF-------------------------------------LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS---------------------KKMLLY-------------VMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM----N--KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR------------------------------------
>1z63A
FQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA--PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRD-----------TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK--VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGFGINLTSANRVIHFDRWWN-P---DQATDRVYRIGQ-----TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSV
[Model]
329-690
1z63B
18%
>target
---------AAVLRPYQEKSLRKMFGNG-RARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQSHCKLGLTATLLREDDKIADLNF-------------------------------------LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS---------------------KKMLLY-------------VMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM----N--KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR------------------------------------
>1z63B
FQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA--PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRD-----------TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK--VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGFGINLTSANRVIHFDRWWN-P---DQATDRVYRIGQ-----TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSV
[Model]
3b6e: CRYSTAL STRUCTURE OF HUMAN DECH-BOX RNA HELICASE MDA5 (MELANOMA DIFFERENTIATION-ASSOCIATED PROTEIN 5), DECH- DOMAIN Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
328-485
3b6eA
18%
>target
------------PAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLT---------I-VQSHCKLGLTAT
>3b6eA
DEENVAARASPEPELQLRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGLKISFPEVVKSCDIIISTAQILENSLL---------NGVQLSDFSLIIIDECVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS
[Model]
2yjt: CRYSTAL STRUCTURE OF E. COLI DEAD-BOX PROTEIN SRMB BOUND TREGULATOR OF RIBONUCLEASE ACTIVITY A (RRAA) Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-696
2yjtD
18%
>target
--------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------------
>2yjtD
RKKIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT-EGRVNVLVATDVAARGIDIPDVSHVFNFDMP-RSGDTYLHRIGRTARAGRKG-------TAISLVEAH--DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSE
[Model]
1z6a: SULFOLOBUS SOLFATARICUS SWI2/SNF2 ATPASE CORE DOMAIN Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-690
1z6aA
18%
>target
---------------------AAVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQSHCKLGLTATLLREDDKIADLNFL---IGPKLY----------------------------------EANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS---------------------KKMLLYV-------------MNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM----N--KPFIYGPTSQNERIQILQNFKFNSKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR-------------------------------------
>1z6aA
LVPRGSHMASKSFQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA--PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRD-----------TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK--VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWD------QATDRVYRIGQ-----TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG
[Model]
3i32: DIMERIC STRUCTURE OF A HERA HELICASE FRAGMENT INCLUDING THC-TERMINAL RECA DOMAIN, THE DIMERIZATION DOMAIN, AND THE RNA BINDING DOMAIN Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-661
3i32A
17%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR-----------------------------------------------------------------------------------------------------------------------------------------------------------
>3i32A
VTYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR-QGEVRVLVATDVAARGLDIPQVDLVVHYRMPD-RAEAYQHRSGRTGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAPAERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPA
[Model]
4db2: MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO AN RNA DUPLEX Solved by: X-RAY, Resolution: 3.16A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
570-689
4db2C
16%
>target
------------------------------RGDKTIVFSDNVFALKHYAIKMN------K--PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-------------------------------------------------------------------------------------------------------------
>4db2C
IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGS-----SVL--FICK--DELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDY
[Model]
570-666
4db2A
20%
>target
-------------------------------RGDKTIVFSDNVFALKHYAIKMN------KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA--------------------------------------------------------------------------------------------------------------------------
>4db2A
SIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
570-666
4db2B
20%
>target
-------------------------------RGDKTIVFSDNVFALKHYAIKMN------KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA--------------------------------------------------------------------------------------------------------------------------
>4db2B
SIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
555-662
4db2D
16%
>target
------------SKFRSCQFLIKYHEQ---RGDKTIVFSDNVFALKHYAIKMN------KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA---------------------------------------------------------------------------------------------------------------------
>4db2D
IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDV---------VHEVLQIGVPS-ELANYIHRIGSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDY
[Model]
3nbf: Q28E MUTANT OF HERA HELICASE N-TERMINAL DOMAIN BOUND TO 8- Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3nbfA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3nbfA
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3nbfC
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3nbfC
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3nbfB
15%
>target
---------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLL---------------------
>3nbfB
EFKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
330-487
3nbfD
16%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL--------------------
>3nbfD
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EGK--D-LI---GQAGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI
[Model]
2gxu: HERA N-TERMINAL DOMAIN IN COMPLEX WITH ORTHOPHOSPHATE, CRYSTAL FORM 1 Solved by: X-RAY, Resolution: 1.67A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
2gxuA
16%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQSH-CKLGLTATLL--------------------
>2gxuA
MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI
[Model]
2kbe: SOLUTION STRUCTURE OF AMINO-TERMINAL DOMAIN OF DBP5P Solved by: NMR, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
2kbeA
16%
>target
-------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK--DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFR----RVLTIVQ-SHCKLGLTATLL---------------------
>2kbeA
YEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK--------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT
[Model]
1rif: CRYSTAL STRUCTURE OF THE UVSW HELICASE FROM BACTERIOPHAGE Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-503
1rifB
16%
>target
--------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLIGPK---
>1rifB
MDIKVHFHDFSHVRIDCEESTFHELRDFFSFEADGYRFNPRFRYGNWDGRIRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP----------KEW-FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKP
[Model]
329-503
1rifA
16%
>target
--------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLIGPK---
>1rifA
MDIKVHFHDFSHVRIDCEESTFHELRDFFSFEADGYRFNPRFRYGNWDGRIRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP----------KEW-FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKP
[Model]
3dkp: HUMAN DEAD-BOX RNA-HELICASE DDX52, CONSERVED DOMAIN I IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3dkpA
16%
>target
--------------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFR----RVLTIVQ--SHCKLGLTATLL---------------------
>3dkpA
SMKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HG--RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP------PGIDLASVEWLVVDESDKLFEDGGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA
[Model]
2hjv: STRUCTURE OF THE SECOND DOMAIN (RESIDUES 207-368) OF THE BACILLUS SUBTILIS YXIN PROTEIN Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
553-683
2hjvB
15%
>target
----------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT--------------------
>2hjvB
NIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK-RGEYRYLVATDVAARGIDIENISLVINYDLPL-EKESYVHRTGRTGRAGNK-------GKAISFVTAFEKRFLADIEEYIGFEIQKIEA
[Model]
553-682
2hjvA
16%
>target
-------------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------
>2hjvA
TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK-RGEYRYLVATDVAARGIDIENISLVINYDLP-LEKESYVHRTGRTGRAGNK-------GKAISFVTAFEKRFLADIEEYIGFEIQKIEA
[Model]
3fe2: HUMAN DEAD-BOX RNA HELICASE DDX5 (P68), CONSERVED DOMAIN IIN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3fe2B
16%
>target
---------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR----------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLL---------------------
>3fe2B
QEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS-G--LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--------KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA
[Model]
331-487
3fe2A
16%
>target
---------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR----------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLL---------------------
>3fe2A
QEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS-G--LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--------KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA
[Model]
2gxq: HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 1 Solved by: X-RAY, Resolution: 1.67A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
2gxqA
16%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQSH-CKLGLTATLL--------------------
>2gxqA
MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI
[Model]
2gxs: HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 2 Solved by: X-RAY, Resolution: 1.67A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
2gxsB
16%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>2gxsB
MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--------VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
2gxsA
16%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQSH-CKLGLTATLL--------------------
>2gxsA
MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI
[Model]
4a15: CRYSTAL STRUCTURE OF AN XPD DNA COMPLEX Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
333-398
4a15A
16%
>target
RPYQEKSLRKM---FGNGRARSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4a15A
RQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQFRKFIPDMKKTSDPASDIYNFFISAQAR
[Model]
1wrb: CRYSTAL STRUCTURE OF THE N-TERMINAL RECA-LIKE DOMAIN OF DJVLGB, A PRANARIAN VASA-LIKE RNA HELICASE Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1wrbA
15%
>target
------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ-----SHCKLGLTATLL--------------------
>1wrbA
KYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILE-H--RDIMACAQTGSGKTAAFLIPIINHLVCQDLKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG
[Model]
331-487
1wrbB
15%
>target
---------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ--S---HCKLGLTATLL---------------------
>1wrbB
SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILE-H--RDIMACAQTGSGKTAAFLIPIINHLVCQDLYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR
[Model]
2way: STRUCTURE OF THE HUMAN DDX6 C-TERMINAL DOMAIN IN COMPLEX WITH AN EDC3-FDF PEPTIDE Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-696
2wayA
15%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------------
>2wayA
KGVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFR-NGLCRNLVCT-----DLDIQAVNVVINFDFPK-LAETYLHRIGL------G-L-----A--INLITYD--DRFNLKSIEEQLGTEIKPIPSNIDKSLYVA
[Model]
553-696
2wayC
15%
>target
----------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------------------
>2wayC
GVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFR-NGLCRNLVCT-------DLQAVNVVINFDFPK-LAETYLHRIGL------G-L-----A--INLITYD--DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEY
[Model]
3bor: CRYSTAL STRUCTURE OF THE DEADC DOMAIN OF HUMAN TRANSLATIONINITIATION FACTOR 4A-2 Solved by: X-RAY, Resolution: 1.85A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3borA
15%
>target
-------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ-SHCKLGLTATLL------------------
>3borA
EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK-G--YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG------EAPHIVVGTPGRVFDMLNR--------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRIL
[Model]
4b3f: CRYSTAL STRUCTURE OF 1GHMBP2 HELICASE Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-397
4b3fX
15%
>target
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b3fX
SAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELESKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDIVP
[Model]
2d7d: STRUCTURAL INSIGHTS INTO THE CRYPTIC DNA DEPENDENT ATP-ASEACTIVITY OF UVRB Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-689
2d7dA
15%
>target
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-HGG---SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------
>2d7dA
DRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEG-----R-VIM--YADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKKERQKVVEQMEHEMKEAAKALDFERAAELRDLL
[Model]
2oca: THE CRYSTAL STRUCTURE OF T4 UVSW Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-681
2ocaA
15%
>target
--------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK-GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ----------------------------------------------
>2ocaA
MDIKVHFHDFSHVRIDCEESTFHELRDFFSFEADGYRFNPRFRYGNWDGRIRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EWF--SQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSELKINSIFLRYPDEFTTKLK--GKTY--------QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAE-NGKGIIIVASYGVFSTGISVKNLHHVVLAH-GVKSKIIVLQTIGRVLRKHGSKT----IATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGIDRIQRYADEKFNYVMKTVNLL
[Model]
2nmv: DAMAGE DETECTION BY THE UVRABC PATHWAY: CRYSTAL STRUCTURE OF UVRB BOUND TO FLUORESCEIN-ADDUCTED DNA Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
556-689
2nmvA
15%
>target
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-HGG---SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------
>2nmvA
DRFELVKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEG-----R-VI--MYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKKERQKVVEQMEHEMKEAAKALDFERAAELRDLL
[Model]
3mwj: Q28W MUTANT OF HERA N-TERMINAL RECA-LIKE DOMAIN, APO FORM Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3mwjB
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwjB
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3mwjA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwjA
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
1hv8: CRYSTAL STRUCTURE OF A DEAD BOX PROTEIN FROM THE HYPERTHERMOPHILE METHANOCOCCUS JANNASCHII Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
1hv8B
15%
>target
-------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK-----PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNFLIG-PKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------
>1hv8B
VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEY--NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIKAKI--------NANIEQSYVEVN-----------------------ENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK-QKKIRILIATDVMSRGIDVNDLNCVINYHLP-QNPESYMHRIGRTGRAGKKG-----KA--ISIINRR--EYKKLRYIERAMKLKIKKLK
[Model]
331-696
1hv8A
15%
>target
-------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK-----PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNFLIG-PKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------
>1hv8A
VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEY--NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIKAKI--------NANIEQSYVEVN-----------------------ENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK-QKKIRILIATDVMSRGIDVNDLNCVINYHLP-QNPESYMHRIGRTGRAGKKG-----KA--ISIINRR--EYKKLRYIERAMKLKIKKLK
[Model]
1t5i: CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF UAP56 Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-689
1t5iA
15%
>target
-----------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-------------------
>1t5iA
GLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRILVATNLFGRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGTK-------GLAITFVSDEN-DAKILNDVQDRFEVNISELPEQTR
[Model]
1d9x: CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
557-676
1d9xA
15%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFY-------------------------------------------
>1d9xA
EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIFRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIEAEVDALTGKVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----NG-HVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV
[Model]
2wax: STRUCTURE OF THE HUMAN DDX6 C-TERMINAL DOMAIN IN COMPLEX WITH AN EDC3-FDF PEPTIDE Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
553-682
2waxC
15%
>target
-----------NPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD-------------------------------
>2waxC
KGVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPK-LAETYLHRIGS-GRFGHL-------GLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAE
[Model]
552-682
2waxA
15%
>target
---------MNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM---NK--PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--------------------------------
>2waxA
GVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFP-KLAETYLHRIGRS---L-G--------LAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEY
[Model]
2p6n: HUMAN DEAD-BOX RNA HELICASE DDX41, HELICASE DOMAIN Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-697
2p6nB
15%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLV------------
>2p6nB
LDVIQEVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR-EGKKDVLVATDVASKGLDFPAIQHVINYDMP-EEIENYVHRIGRTGCST--GI-----A--TTFINKAC-DESVLMDLKALLLEAKQKVPPVLQV
[Model]
554-696
2p6nA
15%
>target
------------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL----------------
>2p6nA
LDVIQEVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR-EGKKDVLVATDVASKGLDFPAIQHVINYDMP-EEIENYVHRIGRTGCTG--------IA--TTFINKACDE-SVLMDLKALLLEAKQKVPPVLQVLHC
[Model]
3nej: Q28E MUTANT OF HERA RNA HELICASE N-TERMINAL DOMAIN - PERFEHEXAGONAL FORM Solved by: X-RAY, Resolution: 2.57A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3nejB
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3nejB
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-GK--DL--IGQARTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3nejA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3nejA
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPQ--VASE----LTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
2rb4: CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF HUMAN DDX25 RNHELICASE Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-682
2rb4A
17%
>target
-----------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD-------------------------
>2rb4A
LTLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR-DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVGEEPDYETYLHRIGRTKKG--------LAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD
[Model]
555-696
2rb4B
15%
>target
-----------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGS---RRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-------------
>2rb4B
LTLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR-DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVGEEPDYETYLHRIG---RTK--G-------LAFNMIEVD--ELPSLMKIQDHFNSSIKQLNAEDMD
[Model]
3h1t: THE FRAGMENT STRUCTURE OF A PUTATIVE HSDR SUBUNIT OF A TYPI RESTRICTION ENZYME FROM VIBRIO VULNIFICUS YJ016 Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-665
3h1tA
15%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFG---NGRARSGVIVLPCGAGKSLVGVTACCTVR------------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLT-TKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-------------PFIYGPTSQNERIQILQNFKF--NSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG--------------------------------------------
>3h1tA
SMALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQGMQQAKDYAEILGLKFAYSTNGHEILEFDYTTGEEQLLSRFPTPDELFKRLCGDEGIKDEDLDTLLSPYHHVPRYYQQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADTFTPFGDARHKIEGVV------------------KSREIYFAIYQSIPG----------LYKEFPQDFFDLIIIDECHW------REILEYFEPAFQIGMTATPLREDNR--DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDATKDFERVIALKARTDA--------FAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE-EGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL-ARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQNFADPDFDGYPEIEDEVVIDEDGEEVV
[Model]
4b3g: CRYSTAL STRUCTURE OF IGHMBP2 HELICASE IN COMPLEX WITH RNA Solved by: X-RAY, Resolution: 2.85A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-397
4b3gA
15%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b3gA
AAVESFVTKQLDLLELERDAEVEERRSWLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDGSQLATGILTRVTQKSVTVAFDEQQSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDIVP
[Model]
330-397
4b3gB
15%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b3gB
SAAVESFVTKQLDLLELERDAEVEERRSWLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDLATGILTRVTQKSVTVAFDLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDIVP
[Model]
4a4d: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN DEHELICASE DDX5 (P68) Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-487
4a4dA
15%
>target
---------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR----------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>4a4dA
PKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--------GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA
[Model]
3mwl: Q28E MUTANT OF HERA N-TERMINAL RECA-LIKE DOMAIN IN COMPLEXOXOADENOSINE Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3mwlA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwlA
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3mwlB
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwlB
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
1t5l: CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB POINT MUTANT Y96A REVEALING A NOVEL FOLD FOR DOMAIN 2 Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
557-676
1t5lB
15%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFY-------------------------------------------
>1t5lB
VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----NG-HVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV
[Model]
557-676
1t5lA
15%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFY-------------------------------------------
>1t5lA
VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----NG-HVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV
[Model]
1vec: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF RCK/P54, A HUMAN DEAD-BOX PROTEIN Solved by: X-RAY, Resolution: 2.01A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1vecA
15%
>target
------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL------------------
>1vecA
KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALS-G--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN
[Model]
331-487
1vecB
15%
>target
------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL------------------
>1vecB
KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALS-G--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN
[Model]
1t6n: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN UAP56 Solved by: X-RAY, Resolution: 1.94A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1t6nA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAK-DK-----P-MGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFR----RVLTIVQSH-CKLGLTATLL-------------------
>1t6nA
SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-G--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV
[Model]
331-487
1t6nB
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAK-DK-----P-MGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFR----RVLTIVQSH-CKLGLTATLL-------------------
>1t6nB
SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-G--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV
[Model]
3uwx: CRYSTAL STRUCTURE OF UVRA-UVRB COMPLEX Solved by: X-RAY, Resolution: 4.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
557-687
3uwxB
15%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-H---GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS----------------------------------
>3uwxB
VEGRFQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLHSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYISATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----NG-HVIMYA--DTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV
[Model]
3v4r: CRYSTAL STRUCTURE OF A UVRB COMPLEX/DNA Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
556-677
3v4rA
14%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-HG---GSRRQEAQRLGRILRAKKGAIAEEYNAFFYT-------------------------------------
>3v4rA
DRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE-----G-RVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINK
[Model]
557-687
3v4rB
15%
>target
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-HGG---SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS----------------------------
>3v4rB
DRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE-----G-RVIMYA--DKITKSMEIAINETKRRREQQERFNEEHGITPKTIN
[Model]
3ly5: DDX18 DEAD-DOMAIN Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3ly5A
15%
>target
-------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC-CTV---------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DK-----PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLL------------------
>3ly5A
TGAFEDTSFLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE-G--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV
[Model]
331-487
3ly5B
15%
>target
---------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC-CTV---------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DK-----PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ-SHCKLGLTATLL------------------
>3ly5B
GLTGAFEDTSFLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE-G--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV
[Model]
3mwk: Q28E MUTANT OF HERA N-TERMINAL RECA-LIKE DOMAIN, COMPLEX WAMP Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3mwkB
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwkB
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
331-487
3mwkA
15%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR--------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3mwkA
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALE-G--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIK
[Model]
3mwy: CRYSTAL STRUCTURE OF THE CHROMODOMAIN-ATPASE PORTION OF THCHROMATIN REMODELER Solved by: X-RAY, Resolution: 3.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
328-694
3mwyW
14%
>target
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAAVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK-------------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR--RVLTIVQSHCKLGLTATLLREDDKIADLNFL---IGPKL----------------------YEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKK--------------------------------------MLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---KP--FIYGPTSQNERIQILQNFKF-NSKVNTIFV-SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR-----------------------------------------------------------------------
>3mwyW
DFHGIDIVINHRLKTSKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS-TMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPKTMKFNVLLTTYEYILK----------DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN--IKELAALVNFLMPGRFNQDEEQEEYIHDLHRRIQPFILRRLKKDVEK--SLPSKTERILRVELSDVQTEYYKNILTKNYSFSLLNIMNELKKASNHPYLFDNAEERVLQKFMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW-NPQADLQAMARAHRIGQ-----KNHVMVYRLVSKDTVEEEVLERARKKMILEYNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFE
[Model]
3iuy: CRYSTAL STRUCTURE OF DDX53 DEAD-BOX DOMAIN Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3iuyA
15%
>target
-----------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR--KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL-------------------
>3iuyA
MTCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QG--IDLIVVAQTGTGKTLSYLMPGFIHLDNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGQIEDISKGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV
[Model]
331-487
3iuyB
14%
>target
-----------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL-------------------
>3iuyB
MTCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQ-G--IDLIVVAQTGTGKTLSYLMPGFIHLDSNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICI--------YGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV
[Model]
2db3: STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX PROTEINDROSOPHILA VASA Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2db3A
14%
>target
----------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ---SHCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------
>2db3A
YIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-G--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN-----------------------KYAKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGNNG-------RATSFFDPE-KDRAIAADLVKILEGSGQTVPDFLR
[Model]
330-696
2db3D
14%
>target
----------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ---SHCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------
>2db3D
YIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-G--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN-----------------------KYAKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGNNG-------RATSFFDPE-KDRAIAADLVKILEGSGQTVPDFLR
[Model]
330-696
2db3C
14%
>target
----------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ---SHCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------
>2db3C
YIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-G--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN-----------------------KYAKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGNNG-------RATSFFDPE-KDRAIAADLVKILEGSGQTVPDFLR
[Model]
330-696
2db3B
14%
>target
----------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQ---SHCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------
>2db3B
YIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-G--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN-----------------------KYAKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGNNG-------RATSFFDPE-KDRAIAADLVKILEGSGQTVPDFLR
[Model]
2hxy: CRYSTAL STRUCTURE OF HUMAN APO-EIF4AIII Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
2hxyC
14%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hxyC
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVE----------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
331-696
2hxyB
14%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hxyB
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVE----------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
331-696
2hxyA
14%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hxyA
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVE----------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
331-696
2hxyD
14%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hxyD
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVE----------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
1wp9: CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS HEF HELICASE DOMA Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
326-690
1wp9A
14%
>target
--LKPA-AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTI----VQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANW-LELQKKGYIARVQCAEVWCPMSPEFY--------------------------------REYLTT-----------KT--S---------------------------KKM------------------LL-----------------YVMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGP-TSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR---
>1wp9A
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKQREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPV-PSAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSR
[Model]
326-689
1wp9B
15%
>target
--LKP-AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTIV----QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANW-LELQKKGYIARVQCAEVWCPMSPEFYR--EY-----------LTTK-----------------------------TS-K-----------------KML--------------LY---------------------------------VMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNK---P--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----
>1wp9B
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG--SQREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSRQ
[Model]
327-689
1wp9F
14%
>target
---KPA-AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTIV----QSHCKLGLTATLLREDDKIADLNFLIGPKL--YEAN-WLELQKKGYIARVQCAEVWCPMSPEFYR---EY-------LT---------------------------------TKTSKKM----------------LL---------------Y---------------------------------VMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNKPFI-YGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----
>1wp9F
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDV--RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVQREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSRQ
[Model]
327-689
1wp9E
14%
>target
---KPA-AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTIV----QSHCKLGLTATLLREDDKIADLNFLIGPKL--YEAN-WLELQKKGYIARVQCAEVWCPMSPEFYR---EY-------LT---------------------------------TKTSKKM----------------LL---------------Y---------------------------------VMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNKPFI-YGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----
>1wp9E
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDV--RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVQREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSRQ
[Model]
327-689
1wp9C
14%
>target
---KPA-AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTIV----QSHCKLGLTATLLREDDKIADLNFLIGPKL--YEAN-WLELQKKGYIARVQCAEVWCPMSPEFYR---EY-------LT---------------------------------TKTSKKM----------------LL---------------Y---------------------------------VMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNKPFI-YGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----
>1wp9C
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDV--RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVQREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSRQ
[Model]
329-692
1wp9D
14%
>target
------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTI----VQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANW---LELQKKGYIARVQCAEVWCPMSPEFYRE----------YLT---------------------------------TKTSKK-------------------------------------------MLLY------------------VMNPSKFRSCQFLIKYHE--QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR-
>1wp9D
MVLRRDLIQPRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR--PYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKA-KRFREQKLILDEFA-RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWSSR
[Model]
2j0q: THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 3.2 RESOLUTION Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2j0qA
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------
>2j0qA
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELT----LEGIKQFFVAV--E--------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLI
[Model]
330-696
2j0qB
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------
>2j0qB
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELT----LEGIKQFFVAV--E--------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLI
[Model]
3ex7: THE CRYSTAL STRUCTURE OF EJC IN ITS TRANSITION STATE Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
3ex7H
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>3ex7H
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVE--R--------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDL-PNNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
330-696
3ex7C
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>3ex7C
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVE--R--------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDL-PNNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
2j0s: THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 2.2 RESOLUTION Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2j0sA
14%
>target
--------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------
>2j0sA
EDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELT----LEGIKQFFVAV--ER--------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLI
[Model]
2vsf: STRUCTURE OF XPD FROM THERMOPLASMA ACIDOPHILUM Solved by: X-RAY, Resolution: 2.9A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
560-646
2vsfA
14%
>target
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFI--YGPTSQNERIQILQNFKFNSKVNTIFVS--KVADTSFDLPEANVLIQISSHG----------------------------------------------------------------------------------------
>2vsfA
YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDH--GTIFAVSGGRLSEGNELE---MIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQFRKFIPDMKKTSDPASDIYNFFISAQAR
[Model]
1qde: CRYSTAL STRUCTURE OF THE ATPASE DOMAIN OF TRANSLATION INITIATION FACTOR 4A FROM SACCHAROMYCES CEREVISIAE-THE PROTOTYPE OF THE DEAD BOX PROTEIN FAMILY Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1qdeA
14%
>target
-------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL------------------
>1qdeA
IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGLR-----DAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL
[Model]
1s2m: CRYSTAL STRUCTURE OF THE DEAD BOX PROTEIN DHH1P Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-682
1s2mA
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIAD-LN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--------------------------------
>1s2mA
NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT-G--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK--------VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPL---TVKEFMVKHLHKPYEINLM-----EELTLKGITQYYAFV-----------------------EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFP-KTAETYLHRIGRSGRFGHL-------GLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAEN
[Model]
1xti: STRUCTURE OF WILDTYPE HUMAN UAP56 Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
1xtiA
14%
>target
---------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKDK-------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFRR----VLTIVQ-SHCKLGLTATLLREDDKIADL-NFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-------------------
>1xtiA
GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-G--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE---IRPVCRKFMQDPMEIFVDDE---TKLTLHGLQQYYVKL-----------------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRILVATNLFGRGMDIERVNIAFNYDMP-EDSDTYLHRVARAGRFGTK-------GLAITFVSDEN-DAKILNDVQDRFEVNISELPDEIDISSYIEQ
[Model]
2p6r: CRYSTAL STRUCTURE OF SUPERFAMILY 2 HELICASE HEL308 IN COMPLEX WITH UNWOUND DNA Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-686
2p6rA
14%
>target
-------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-V--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIV---Q-SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS------SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2p6rA
MKVEELAESISSYAVGILKEEELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNR--------ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN----VTEIAEWLDADYYVSDWRP-------VPLV-EGVLCEGTLELFDGA-------------FSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR-RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER--G-EA--IIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIGRGIAERVVEGISVKS
[Model]
2va8: DNA REPAIR HELICASE HEL308 Solved by: X-RAY, Resolution: 2.3A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-666
2va8B
14%
>target
-----------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM----FRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEV-WCPMSPEFYREYL-TTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2va8B
LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR------PE--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISNY----KQIAKWLGAEPVATNWRP---------VPLIEGVIYPERKK--KEYNVIFKDNTT-----KKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFR-QRKIKVIVATPTLAAGVNLPARTVII--GD-IIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNPDKVKNLLGQKLGEKVVQEAARLLN
[Model]
329-666
2va8A
14%
>target
----------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK----MFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLE--LQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2va8A
EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP------E--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN----YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNT---------TK-------KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFR-QRKIKVIVATPTLAAGVNLPARTVIIGD----IPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNPDKVKNLLGQKLGEKVVQEAARLLN
[Model]
1jr6: SOLUTION STRUCTURE OF AN ENGINEERED ARGININE-RICH SUBDOMAI2 OF THE HEPATITIS C VIRUS NS3 RNA HELICASE Solved by: NMR, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
570-682
1jr6A
14%
>target
---------------------------------RGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH---GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--
>1jr6A
GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIP-TNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPG---------IYRFVAPGER
[Model]
3ber: HUMAN DEAD-BOX RNA-HELICASE DDX47, CONSERVED DOMAIN I IN COMPLEX WITH AMP Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3berA
14%
>target
-----------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL---------------------
>3berA
TEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ-G--RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-------KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS
[Model]
2xb2: CRYSTAL STRUCTURE OF THE CORE MAGO-Y14-EIF4AIII-BARENTSZ- UPF3B ASSEMBLY SHOWS HOW THE EJC IS BRIDGED TO THE NMD MACHINERY Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2xb2X
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------
>2xb2X
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELT----LEGIKQFFVAV--E--------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLI
[Model]
330-696
2xb2A
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------------
>2xb2A
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELT----LEGIKQFFVAV--E--------------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLI
[Model]
1d9z: CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEWITH ATP Solved by: X-RAY, Resolution: 3.15A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
556-684
1d9zA
14%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM-------------------------------------
>1d9zA
EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIFRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIEREVDALTGKVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-----NGH-VIMY--ADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV
[Model]
1d2m: UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
564-686
1d2mA
14%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM----------------------------
>1d2mA
TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELGFVLFPATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGRVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLR-LGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-----G-EVWLY--ADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETV
[Model]
1hei: STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
1heiA
13%
>target
-----------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG--------------------------------------------------------------------------------------------------------------------------------------------------------------
>1heiA
NSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPN---IRTGVR-TITTGSPITYSTYGKFLADGG-----------CSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVT------V-SHPNIEEVA---------LS-TT-GEI------PF---YGKA---------------I-----PLE--VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIP-TNGDVVVVSTDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELMPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEV
[Model]
352-682
1heiB
14%
>target
------------GVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSHG------------GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD-----------------------------------------------------------------------------------------------------------------------------------------------------
>1heiB
SSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSV---------------------------------GSPITYSTYGKFLADG---------GC--SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPP---GSVTV----SHPNIEE---VALSTTGEIPF-----------------YGKAI-----------P--LEV----I----KGG-RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNG-DVVVVSTDALMTGFTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGI---------YRFVAPGERPSGMFDSSVLCECYDAGCAWYELMPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLE
[Model]
2oxc: HUMAN DEAD-BOX RNA HELICASE DDX20, DEAD DOMAIN IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-487
2oxcB
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-----MFRRVLTIVQS-HCKLGLTATLL-------------------
>2oxcB
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL
[Model]
330-487
2oxcA
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-----MFRRVLTIVQS-HCKLGLTATLL-------------------
>2oxcA
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL
[Model]
2f55: TWO HEPATITIS C VIRUS NS3 HELICASE DOMAINS COMPLEXED WITH THE SAME STRAND OF DNA Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
2f55C
14%
>target
--------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTS-FD-LPEANV----LIQISS----------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>2f55C
PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGGSITYSTYGKFLADGG-----------CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEIG---LSNNGEIPF-----------------YGK-----AI--------PI----EAI-----KGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRG-------LDVSVIPP-IGDVVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRSGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVILTHPITKYIMACMS
[Model]
350-665
2f55B
14%
>target
--------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTS-FD-LPEANV----LIQISS----------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>2f55B
PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGGSITYSTYGKFLADGG-----------CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEIG---LSNNGEIPF-----------------YGK-----AI--------PI----EAI-----KGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRG-------LDVSVIPP-IGDVVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRSGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVILTHPITKYIMACMS
[Model]
350-665
2f55A
14%
>target
--------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTS-FD-LPEANV----LIQISS----------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>2f55A
PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGGSITYSTYGKFLADGG-----------CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEIG---LSNNGEIPF-----------------YGK-----AI--------PI----EAI-----KGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRG-------LDVSVIPP-IGDVVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRSGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVILTHPITKYIMACMS
[Model]
2pl3: HUMAN DEAD-BOX RNA HELICASE DDX10, DEAD DOMAIN IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.15A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-488
2pl3A
14%
>target
----------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR---------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLR--------------------
>2pl3A
SMQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ-G--KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGLKHEAERINNINILVCTPGRLLQHMDE-------TVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE
[Model]
1onb: SOLUTION STRUCTURE OF AN ENGINEERED ARGININE-RICH SUBDOMAI2 OF THE HEPATITIS C VIRUS NS3 RNA HELICASE Solved by: NMR, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
570-682
1onbA
14%
>target
---------------------------------RGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH---GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--
>1onbA
GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIP-TNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPG---------IYRFVAPGER
[Model]
2hyi: STRUCTURE OF THE HUMAN EXON JUNCTION COMPLEX WITH A TRAPPEDEAD-BOX HELICASE BOUND TO RNA Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2hyiC
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hyiC
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVE--R--------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDL-PNNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
330-696
2hyiI
14%
>target
-------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIVQS-HCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------------
>2hyiI
DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVE--R--------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVWARGLDVPQVSLIINYDL-PNNRELYIHRIGRSGRYGRK-------GVAINFVKND--DIRILRDIEQYYSTQIDEMPMNVADLILE
[Model]
3b7g: HUMAN DEAD-BOX RNA HELICASE DDX20, CONSERVED DOMAIN I (DEAD) IN COMPLEX WITH AMPPNP (ADENOSINE-(BETA,GAMMA)- IMIDOTRIPHOSPHATE) Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-487
3b7gA
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-----MFRRVLTIVQS-HCKLGLTATLL-------------------
>3b7gA
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL
[Model]
330-487
3b7gB
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKD-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-----MFRRVLTIVQS-HCKLGLTATLL-------------------
>3b7gB
ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL
[Model]
4a4z: CRYSTAL STRUCTURE OF THE S. CEREVISIAE DEXH HELICASE SKI2 AMPPNP Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-675
4a4zA
13%
>target
-----------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK----MFRRVLTIVQSHCK-LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCA-EVWCPMSP--EFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQR-GDKTIVFSDNVFALKHYAIKM--------------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS-----SH---GGSRRQEAQRLGRILRAKKGAIAEEYNAFF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4a4zA
KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLE-QG--DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFV----NIGLITGDVQI-NPDANCLIMTTEILRSMLYRG------ADLI--RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPK---R--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSK-KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS-KGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGL---DSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTTKPYKYFPKADGYRRRNFPKFQKTDFYMEEVPVTIEVITKRKFAPLGKVIKKDVAALNEFNAETNNILDGKTLKEAGLKIHQILLDRTNIRDESQHIVPKFKAHVIKKKIEELYHLMSDSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL
[Model]
3gpl: CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF RECD2 WITH DNAAND ADPNP Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
332-488
3gplB
13%
>target
--------------------------------------------------------------------------------------------------------------------------------------------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3gplB
ALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDEGRIYLPHVLRAEKKLASLIRTLLATPPADGNDDWAVPKKARKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRL----GEVTGRTASTVHRL--------------------LGYGP---QG-FR-HNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRA
[Model]
332-488
3gplA
13%
>target
--------------------------------------------------------------------------------------------------------------------------------------------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3gplA
ALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDEGRIYLPHVLRAEKKLASLIRTLLATPPADGNDDWAVPKKARKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRL----GEVTGRTASTVHRL--------------------LGYGP---QG-FR-HNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRA
[Model]
3fmp: CRYSTAL STRUCTURE OF THE NUCLEOPORIN NUP214 IN COMPLEX WITTHE DEAD-BOX HELICASE DDX19 Solved by: X-RAY, Resolution: 3.19A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3fmpD
13%
>target
--------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFR----RVLTIVQS-HCKLGLTATLL--------------------
>3fmpD
LVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK
[Model]
331-487
3fmpB
13%
>target
--------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFR----RVLTIVQS-HCKLGLTATLL--------------------
>3fmpB
LVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK
[Model]
3i5y: STRUCTURE OF MSS116P BOUND TO SSRNA CONTAINING A SINGLE 5-BRU AND AMP-PNP Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-689
3i5yA
13%
>target
---------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSEAKD-------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-------QSHCK-LGLTATLLREDDKIADLNFLIGPKL-YEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------------------------------------------------------
>3i5yA
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE-------KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD--DKVQKLANNIMNKKECLFLDT---VDKNEPEAHERIDQSVVI----------SEKFA----NSIFAAVEHIKKQIKERD--SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGKEG-----SS--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
3kqk: THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NSHELICASE REVEAL A RATCHET TRANSLOCATION MECHANISM Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
3kqkA
13%
>target
----------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------S------------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqkA
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIEE-------------------VALSSTGEI-PFYGKA---------------IP-----IET--IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIPT-SGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMS
[Model]
351-665
3kqkB
13%
>target
----------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------S------------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqkB
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIEE-------------------VALSSTGEI-PFYGKA---------------IP-----IET--IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIPT-SGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMS
[Model]
3i62: STRUCTURE OF MSS116P BOUND TO SSRNA AND ADP-ALUMINUM FLUORIDE Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-689
3i62A
13%
>target
---------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSEAKD-------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-------QSHCK-LGLTATLLREDDKIADLNFLIGPKL-YEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------------------------------------------------------
>3i62A
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE-------KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD--DKVQKLANNIMNKKECLFLDT---VDKNEPEAHERIDQSVVI----------SEKFA----NSIFAAVEHIKKQIKERD--SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGKEG-----SS--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
2zj2: ARCHAEAL DNA HELICASE HJM APO STATE IN FORM 1 Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-685
2zj2A
13%
>target
--------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH---GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2zj2A
MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--------SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN----PEELAEWLNAELIVSDWRPV------KLRRGVFYQGFVT---------WED--------GSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR-KGIIKAVVATPTLSTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV-----GEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYIERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYN
[Model]
2p6u: APO STRUCTURE OF THE HEL308 SUPERFAMILY 2 HELICASE Solved by: X-RAY, Resolution: 3.14A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-666
2p6uA
13%
>target
--------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-V--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM----FRRVLTIV----QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--SHGGSRRQEAQRLGRILRAKKGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2p6uA
MKVEELAESISSYAVGILFPPQAEAVEKVFS-G--KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--------SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP----NVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAF---------------------STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR-RGNIKVVVATPTL---VNLPARRVIVRSLYRFKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIGRGIAERVVEGISVKS
[Model]
2wwy: STRUCTURE OF HUMAN RECQ-LIKE HELICASE IN COMPLEX WITH A DNSUBSTRATE Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-665
2wwyA
12%
>target
----------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK--MFR----RV---LTIVQSHCKLGLTATLLREDDKIADLNF--LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2wwyA
SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-G--KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GIS---ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FMS--RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLT-DAQKILCIEKCFTFTASFN-------RPNLYYEVRQKPSN---------------------TEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-ANEIQVVVATVAFGMGIDKPDVRFVIHHSMS-KSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAITMQVTK
[Model]
330-665
2wwyB
13%
>target
--------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK--MFR----RV---LTIVQSHCKLGLTATLLREDDKIADLNFL---IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2wwyB
SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-G--KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GIS---ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FMS--RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVL--TDAQKILCIEKCFTFTASFN-------RPNLYYEVRQKPSN---------------------TEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-ANEIQVVVATVAFGMGIDKPDVRFVIHHSMS-KSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAITMQVTKS
[Model]
3pey: S. CEREVISIAE DBP5 BOUND TO RNA AND ADP BEF3 Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-682
3peyA
13%
>target
----------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK--DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-----MFRRVLTIVQS-HCKLGLTATLLREDDKIADLNFLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--------------------------------------
>3peyA
AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK--------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVR--QYAKKIVPNANTLELQTNEV----NVDAIKQ--LYMDC--------------------KNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLK
[Model]
1q0u: CRYSTAL STRUCTURE OF THE BSTDEAD N-TERMINAL DOMAIN Solved by: X-RAY, Resolution: 1.85A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1q0uB
12%
>target
------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTAD----DSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL-------------------
>1q0uB
AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR-G--ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--------ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV
[Model]
331-487
1q0uA
13%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTA---D-DSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL--------------------
>1q0uA
TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR-G--ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--------QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL
[Model]
4b71: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
4b71A
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b71A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
351-665
4b71B
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b71B
GSVVIVGRIILSSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP--------------F---YGKA-----------IPI--E---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
2v8o: STRUCTURE OF THE MURRAY VALLEY ENCEPHALITIS VIRUS RNA HELICASE TO 1.9A RESOLUTION Solved by: X-RAY, Resolution: 1.9A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
343-738
2v8oA
13%
>target
-------MFGNGRARSGVIVLPCGAGKSLVGVTAC----CTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF--RRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI----------SS---------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQ-GYSYKVITHLKGMDTDSD----LMYGTQEEQGQLLQLVLSASD-----------------------------------------------------------------
>2v8oA
GPAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR---GL---PVRYLTPRE--HSGNEIVDVMCHATLTHR---------LMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSD---P--FPD-------------TN---SPVHDVSSEIP--DRAW---------------------SSGFEW-IT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTE----YPKCK-NGDWDFVITTDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI----GDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADLPVWLAYKVASNGIQYNDRKWCFDGPRSNIILEDNNEVEKPRWLDARVYSDHQSLKWFKDFAAGK
[Model]
3eiq: CRYSTAL STRUCTURE OF PDCD4-EIF4A Solved by: X-RAY, Resolution: 3.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
3eiqD
12%
>target
--------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK----MFRRVLTIVQSHC-KLGLTATLLREDDKIADLN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM---NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL---------
>3eiqD
VIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL--EVTKKFMRDPIRILVKKEEL----TLEGIRQFYINVER----------------------EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMDMDQKERDVIMREF-------VLITTDLLARGIDVQQVSLVINYDLP-TNRENYIHRIGRGGRFGRK-------GVAINMVTEE--DKRTLRDIETFYNTSIEEMPL
[Model]
331-682
3eiqA
13%
>target
--------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DK------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQSHC-KLGLTATLLREDDKIADL-NFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------
>3eiqA
VIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR--------YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS--DVLEVTKKFMRDPIRILVKKEEL----TLEGIRQFYINVE----------------------REEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMMDQKERDVIMREFR-SG---VLITTDLL--AIDVQQVSLVINYDLP-TNRENYIHRIGR------G------VA--INMVTEEDKRTLRDIETFYNTSIEEMPL
[Model]
2qeq: CRYSTAL STRUCTURE OF KUNJIN VIRUS NS3 HELICASE Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
352-735
2qeqA
13%
>target
---GVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK---PF--IYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI----------SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----RKRQRFLVNQGYSYKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS------------------------------------------------------------------------------
>2qeqA
KQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR---GLP---IR-YQTSA---NGNEIVDVMCHATLTHRL---------MSPHRVPNYNLFVMDEAHFTDPASIAARGYISTRVELGEAAAIFMTATPPGTSD----------PF---------PES--NAPISDLQTEIPD--RAW---------------------NSGYE-WIT---EYIGKTVWFVPSVKMGNEIALCLQRAGKKVIQLNR----------------NDDWDFVVTTDISEMGANF-KASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGRNPSQAGD----EYCY----GGHTNEDDSNCAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARVYSDHQALKSFKDFASG
[Model]
353-736
2qeqB
13%
>target
--VIVLPCGAGKSL---VGVTACC-TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK--MFRRVLTIVQSH---CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM---NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSK-------VADTSFDL-P----EA-NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME---MSYS-RKRQRFLVNQGYSYKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLSA-------------------------------------------------------------------------------
>2qeqB
KQITVLD----KTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR---GLP---IRYQTS------GNEIVDVMCHATLTHRLM---------SPHRVPNYNLFVMDEAHFTDPASIAARGYISTRVELGEAAAIFMTATPP---GTSD-------PFPE--------S---NAPISDLQTEIPDRAW-----------------------YE----WIT---EYIGKTVWFVPSVKMGNEIALCLQRAGKKVIQLN------------------WDFVVTTDISFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGR------D----EYCY---GGHTNEDDSNCAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARVYSDHQALKSFKDFASGKR
[Model]
1xtj: STRUCTURE OF HUMAN UAP56 IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
1xtjA
13%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV---R--KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKDK-------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MF----RRVLTIVQS-HCKLGLTATLLREDDKIADLN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL----------------
>1xtjA
SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL---GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR--PVCRKFMQDPMEIFVDDE---TKLTLHGLQQYYVKLK-----------------------DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRILVAT-----NLDIERVNIAFNYDMP-EDSDTYLHRVARAGRFGTK-------GLAITFVSDE-NDAKILNDVQDRFEVNISELPDEIDISSY
[Model]
3fhc: CRYSTAL STRUCTURE OF HUMAN DBP5 IN COMPLEX WITH NUP214 Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3fhcB
13%
>target
---------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAK-D--KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFRR----VLTIVQS-HCKLGLTATLL--------------------
>3fhcB
NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK
[Model]
2zjo: CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS3 HELICASE WITH ANOVEL INHIBITOR Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
2zjoA
13%
>target
------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SS------------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------------
>2zjoA
NSSPPAVPQAFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDP---NIRTGVR-TITTGAPITYSTYGKFLADGG-----------CSGGAYDIIMCDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIEE-------------------IALSNTGE-IPFYGKA---------------I-PI-ETI-----KGGRHLIFCHSKKKCDELAAKLSALGIHAVAYYRGLDVS-------VIPA-SGNVVVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTMPQDAVSRSQRRGRTSRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLTRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVV
[Model]
2jls: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.23A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
341-738
2jlsA
13%
>target
----RKMFGNGRARSGVIVLPCGAGKSLVGVTAC--CTV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV--QSHC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI----------SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSY-KVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLSASD-----------------------------------------------------------------------------
>2jlsA
YEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GLP---IRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP---GSTDPFPQSN------------------SPIEDIEREIPERS--W--------NT----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEY----PKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
1yks: CRYSTAL STRUCTURE OF YELLOW FEVER VIRUS NS3 HELICASE Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
343-736
1yksA
13%
>target
--MFGNGRARSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV-Q-SHC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ---------ISSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----RKRQRFLVNQGYS-YKVITHLKGMDTD----SDLMYGTQEEQGQLLQLVLSA--------------------------------------------------------------------------------
>1yksA
SHMLKKG--MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH---GL---DVKFHTQAFSAHGSGREVIDAMCHATLTYR---------MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSD---E----FPH------------S--NGEIEDVQTDIP--SEPWN---------------------TGHDW-I---LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT-----------FE--KKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG----DSYYY---SEPTSE-NNAHHVCWLEASM-LLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDERVSSDQSALSEFIKFAEGRR
[Model]
3gfp: STRUCTURE OF THE C-TERMINAL DOMAIN OF THE DEAD-BOX PROTEINDBP5 Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-695
3gfpA
13%
>target
----------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF------------------------
>3gfpA
NVDAIKQLYMDCKNEADKFDVLTELYGLMT--IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKN-SFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKV
[Model]
2jlw: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA2 Solved by: X-RAY, Resolution: 2.6A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
342-734
2jlwA
13%
>target
-------------KMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF--RRVLTIV--QSHCK-LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K--PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI----------SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVL---------------------------------------------------------------------------------
>2jlwA
GSAMGEPDYEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG---L---PIRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLS-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPF--------P--------QS--NSPIEDIEREIPERS-----W--------------N----TGFD-WIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
342-738
2jlwB
13%
>target
-------------KMFGNGRARSGVIVLPCGAGKSLVGVTAC--CTV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV--QSHCK-LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTD---SDLMYGTQEEQGQLLQLVLSASD-----------------------------------------------------------------------------
>2jlwB
GSAMGEPDYEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLS-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSID---PF--------PQ-------SN---SPIEDIEREIPER--S---WN------------------TGFD-WIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDT----EYPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQADGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
3sqx: STRUCTURE OF MSS116P (NTE AND C-TAIL DOUBLE DELETION) BOUNAND AMP-PNP Solved by: X-RAY, Resolution: 2.11A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-689
3sqxA
13%
>target
----------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSE-AKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ--------SHCKLGLTATLLREDDKIADLN-FLIG-PKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----------------------------------------------------------------------------------------------------------
>3sqxA
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKV---QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK---FA----------NSIF-----AAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGS-----S--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIR
[Model]
1ymf: CRYSTAL STRUCTURE OF YELLOW FEVER VIRUS NS3 HELICASE COMPLEXED WITH ADP Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
343-736
1ymfA
13%
>target
--MFGNGRARSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV-Q-SHC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ---------ISSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----RKRQRFLVNQGYS-YKVITHLKGMDTD----SDLMYGTQEEQGQLLQLVLSA--------------------------------------------------------------------------------
>1ymfA
SHMLKKG--MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH---GL---DVKFHTQAFSAHGSGREVIDAMCHATLTYR---------MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSD---E----FPH------------S--NGEIEDVQTDIP--SEPWN---------------------TGHDW-I---LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT-----------FE--KKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG----DSYYY---SEPTSE-NNAHHVCWLEASM-LLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDERVSSDQSALSEFIKFAEGRR
[Model]
3pew: S. CEREVISIAE DBP5 L327V BOUND TO RNA AND ADP BEF3 Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
3pewA
13%
>target
-----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK--DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-----KMFRRVLTIVQS-HCKLGLTATLLREDDKIAD-LNFLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH-----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-------------------------
>3pewA
AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA---VRQYAKKIVPNANTLELQTNEV----NVDAIKQLYM--DC--------------------KNEADKFDVLTELYGVM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKN-SFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLK
[Model]
1gm5: STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION Solved by: X-RAY, Resolution: 3.24A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-696
1gm5A
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFG---NGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-------------------------------------------
>1gm5A
FTSSLFLWGEALPTLLEEFLNEVEKMLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPNLPEARKRYRIQKSLEMIEKLRSWFLIDYLECSGEEVDLSTDIQYAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-------------EDVHFKNLGLVIIDEQHRFEA-----LMNKGKMVDTLVMSATPIPR----SMALAFYGDLDV-TVIDEMP-PGR-KEVQTML--VP------------------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIKSAVEMYEYLSKEVFKLGLMHGRLSQEEKDRVMLEFA-EGRYDILVSTTVIEVGIDVPRANVMVIENPERFGL-AQLHQLRGRVGRGGQE-------AYCFL-VVGDVGEE--AMERLRFFTLNTDGFKIAEYDLKTRGPGEKQHGLSGFKVADLYRDLKLLEW
[Model]
3kql: THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NSHELICASE REVEAL A RATCHET TRANSLOCATION MECHANISM Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
3kqlB
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqlB
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kqlA
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqlA
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
8ohm: CRYSTAL STRUCTURE OF RNA HELICASE FROM GENOTYPE 1B HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RNA Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
8ohmA
13%
>target
--------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>8ohmA
PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGVYMSKAHGIDP---NIRTGV-RAITTGGPITYSTYGKFLADGG-----------CSGGAYDIIICDECHSTDSTSILGIGTVLDQAETAGARLVVLATATPPGSVTV------P-HPNIEE-------------------VALSNTGE-IPFYGKA---------------IP--IEVI-----RGGRHLIFCHSKKKCDELAAKLSALGLNAVAYYRGLDV-------SVIPT-SGDVVVVATDALMTGYT-GDFDSVIDCNTCVTQTVDFSLDPTFTIDTTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKSLTRLKPTLHGPTPLLYRLGALQNEVTLTHPVTKFIMACMS
[Model]
3rrn: S. CEREVISIAE DBP5 L327V BOUND TO GLE1 H337R AND IP6 Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-682
3rrnA
13%
>target
--------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD--KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMF----RRVLTIVQ-SHCKLGLTATLLREDDKIADLNF-LI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------------------------
>3rrnA
GAMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK--------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD---AVRQYAKKIVPNANTLEL--QDA--------IKQLYMDCK----------------------NEADKFDVLTELYGVM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD
[Model]
3p4x: HELICASE DOMAIN OF REVERSE GYRASE FROM THERMOTOGA MARITIMA Solved by: X-RAY, Resolution: 2.41A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-694
3p4xA
13%
>target
-----------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR-----VLTIVQSHCKLGLTATLLREDDKIADLNFLI-GPKLYE-A--NWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE-ANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR---------------------------------
>3p4xA
EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQG---KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVS----------KNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--YERPKNLKPGILVVSSATAKPRGIRPL-LFRDLL--NFTVGR--------LVSVARNITHVRISS-RSKEKLVELL---EIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK-VGKINILIGV----QAYDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLV-----KGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSERE
[Model]
330-680
3p4xB
13%
>target
------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIV-QSHCKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKML-LYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVS----KVADTSFDLPE-ANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS------------------------------------------------
>3p4xB
EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQ-G--KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK---IYERPKNLKPGILVVSSAT---AKPRGIRPLL--FRDLLNFTV----GRLVSVARNITHVRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVK---GVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSERELTD
[Model]
2v1x: CRYSTAL STRUCTURE OF HUMAN RECQ-LIKE DNA HELICASE Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-664
2v1xB
13%
>target
----------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------------KPMGCGILVTTYSMITHTQKRSWEAEQTM-RWLQEQEWGIMVLDEVHTIPAK--MFR----R---VLTIVQSHCKLGLTATLLREDDKIADLNFL--IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2v1xB
SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-G--KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GIS---ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM----FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLT-DAQKILCIEKCFTFTASFN-------RPNLYYEVRQKPSN---------------------TEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-ANEIQVVVATVAFGMGIDKPDVRFVIHHSMS-KSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAITMQVTK
[Model]
331-664
2v1xA
13%
>target
----------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------------KPMGCGILVTTYSMITHTQKRSWEAEQTM-RWLQEQEWGIMVLDEVHTIPAK--MFR----R---VLTIVQSHCKLGLTATLLREDDKIADLNFL--IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2v1xA
SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-G--KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GIS---ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM----FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLT-DAQKILCIEKCFTFTASFN-------RPNLYYEVRQKPSN---------------------TEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-ANEIQVVVATVAFGMGIDKPDVRFVIHHSMS-KSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAITMQVTK
[Model]
1fuk: CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF YEAST EIF4A Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
554-682
1fukA
13%
>target
-----------PSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD----------------------------
>1fukA
IKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPA-NKENYIHRIGRGG-----G-------VAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN
[Model]
2wv9: CRYSTAL STRUCTURE OF THE NS3 PROTEASE-HELICASE FROM MURRAYVALLEY ENCEPHALITIS VIRUS Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-738
2wv9A
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTAC---C-TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV--QSHCK-LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI----------SS---------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-RKRQRFLVNQGYSYKVITHLKGMDTDSD----LMYGTQEEQGQLLQLVLSASD-----------------------------------------------------------------
>2wv9A
ATDMWLERAADVSWEAGAAITTPGVYRIMARGILGRYQAGVGVMHEGVFHTLWHTTRGAAIMSGEGRLTPYWGNVKEDRVTYGGPWKLDQKWNGVDDVQMIVVEPGKPAINVQTKPGIFKTAHGEIGAVSLDYPIGTSGSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR---GLP---VRYLTPRE--HSGNEIVDVMCHATLTHR---------LMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSD---PF---PD------------TN---SPVHDVSSEIPD--RA---------------------WSSGFE-WI---TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDT----EYPKCK-NGDWDFVITTDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI----GDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADLPVWLAYKVASNGIQYNDRKWCFDGPRSNIILEDNNEVEKPRWLDARVYSDHQSLKWFKDFAAGK
[Model]
4b6f: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
4b6fA
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b6fA
ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP-----------------FYGKA-----------IP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTGSVVIVGRIILSGSGS
[Model]
351-665
4b6fB
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ--SH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIY-GPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b6fB
ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEV---ALSNTGEIP-----------------FYGKA-----------IP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS--------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTGSVVIVGRIILSS
[Model]
2jly: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP-PHOSPHATE Solved by: X-RAY, Resolution: 2.4A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
335-735
2jlyB
13%
>target
----------YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC---C-TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQ--SH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlyB
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP---GSTDPFPQ----------------S--NSPIEDIEREIPERS-----WN--T-------------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEY----PKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
335-735
2jlyA
13%
>target
----------YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC---C-TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQ--SH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlyA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP---GSTDPFPQ----------------S--NSPIEDIEREIPERS-----WN--T-------------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEY----PKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
2jlr: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH AMPPNP Solved by: X-RAY, Resolution: 2.0A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
343-735
2jlrA
13%
>target
--MFGNGRARSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTS-EAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV--QSHC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ----------ISSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQ-GYSYKVITHLKGMDTD----SDLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlrA
EDIFRKKR--LTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GLP---IRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP-----FPQ-------------SN---SPIEDIEREIPERS-----W-----N-------------TGFD-WIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE----DDQYVFSGDPLRNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLKGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
2z0m: CRYSTAL STRUCTURE OF HYPOTHETICAL ATP-DEPENDENT RNA HELICASE FROM SULFOLOBUS TOKODAII Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-681
2z0mA
13%
>target
---------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQSHC-KLGLTATLLREDDKIADL-N-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ---------
>2z0mA
MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ-G--KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE---EIRKVVKDFITNYEEIEA-------------------CIGLANV-EHKFVHVK------------DDWRSKVQALREN--KDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFR-EGEYDMLITTDVASRGLDIPLVEKVINFDAP-QDLRTYIHRIGRTGRMGR-------KGEAITFILNEYWLEKEVK
[Model]
4b6e: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
4b6eA
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b6eA
ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP-----------------FYGKA-----------IP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTGSVVIVGRIILSGSGS
[Model]
351-665
4b6eB
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ--SH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIY-GPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b6eB
ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEV---ALSNTGEIP-----------------FYGKA-----------IP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS--------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVTGSVVIVGRIILSS
[Model]
4b74: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
4b74A
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b74A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
351-665
4b74B
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b74B
GSVVIVGRIILSSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP--------------F---YGKA-----------IPI--E---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
1fuu: YEAST INITIATION FACTOR 4A Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
1fuuB
12%
>target
-------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-----DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQS-HCKLGLTATLLREDDKIADLN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM-----NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL----------------
>1fuuB
QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-G--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQ--------RRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV--LEVTTKFMRNPVRILVKKDELTL----EGIK--QFYVNVE--------------------EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLP-ANKENYIHRIGRGGK---G--------VAINFVTNE--DVGAMRELEKFYSTQIEELPSDIATLLN
[Model]
331-487
1fuuA
13%
>target
--------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEA-KD----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ-SHCKLGLTATLL---------------------
>1fuuA
QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-G--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK
[Model]
2j0u: THE CRYSTAL STRUCTURE OF EIF4AIII-BARENTSZ COMPLEX AT 3.0 RESOLUTION Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2j0uA
14%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM----FRRVLTIVQSH-CKLGLTATLLREDDKIADLNF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------
>2j0uA
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK-G--RDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVE--R--------------------EEWKFDTLCDLY-----DITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRVLISTDVW--ARDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAVNFVKND--DIRVLRDIEQYYSTQIDEMPMNVA
[Model]
331-696
2j0uB
13%
>target
----------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLNFLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------
>2j0uB
PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGEDIRKLDYGQHVVAGTPGRVFDMIRRR--------SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH--EVLEMTNKFMTDPIRILVKRDELT----LEGIKQFFVAVER----------------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKM-----RETVSQKERESIMKEFR-SGASRVLIST--------VPQVSLIINYDLP-NNRELYIHRIGRSGRYGRK-------GVAVNFVKNDDI--RVLRDIEQYYSTQIDEMPMNV
[Model]
1qva: YEAST INITIATION FACTOR 4A N-TERMINAL DOMAIN Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
1qvaA
13%
>target
--------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-----DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQS-HCKLGLTATLL-------------------
>1qvaA
QIQTNYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIE-G--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV
[Model]
3oiy: HELICASE DOMAIN OF REVERSE GYRASE FROM THERMOTOGA MARITIMA Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-692
3oiyB
14%
>target
-----------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D---------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR--VLT---IVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLE---LQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE-ANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR----------------------------------
>3oiyB
EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQG---KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK-IFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY--ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSV------A----RN-ITHVRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK-VGKINILIG--VQAYYVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVK-----GVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSER
[Model]
330-680
3oiyA
13%
>target
-------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR-VLTIVQS----HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEF----YREYLTTK-----TSKKMLLYV-MNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSK----VADTSFDLPE-ANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS--------------------------------------------
>3oiyA
AEFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQG---KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVS----------KNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--YERPKNLKPGILVVS------------------SATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLE---IFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVK---GVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSER
[Model]
2ipc: CRYSTAL STRUCTURE OF THE TRANSLOCATION ATPASE SECA FROM THERMUS THERMOPHILUS REVEALS A PARALLEL, HEAD-TO-HEAD DIM Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
332-462
2ipcB
13%
>target
------------------------------------------------------------------------LRPYQEKSLRKMF-GNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGVSVE---QWKQQFKMWSTADDSMICRFTSEAK--DK--PMGCGILVTTYSMITHTQKRSWEAE--QTMRWLQEQEWGIMVLDEVHTI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2ipcB
RRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPDLAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEG----KIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV---GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRLKVE
[Model]
332-462
2ipcD
13%
>target
------------------------------------------------------------------------LRPYQEKSLRKMF-GNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGVSVE---QWKQQFKMWSTADDSMICRFTSEAK--DK--PMGCGILVTTYSMITHTQKRSWEAE--QTMRWLQEQEWGIMVLDEVHTI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2ipcD
RRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPDLAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEG----KIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV---GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRLKVE
[Model]
332-462
2ipcA
13%
>target
-----------------------------------------------------------------------------LRPYQEKSLRKM-FGNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGVSVE---QWKQQFKMWSTADDSMICRFTSEAK--DK--PMGCGILVTTYSMITHTQKRSWEAE--QTMRWLQEQEWGIMVLDEVHTI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2ipcA
MLGLLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPDLAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEG----KIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS---VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRLKVE
[Model]
332-462
2ipcC
13%
>target
-----------------------------------------------------------------------------LRPYQEKSLRKM-FGNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGVSVE---QWKQQFKMWSTADDSMICRFTSEAK--DK--PMGCGILVTTYSMITHTQKRSWEAE--QTMRWLQEQEWGIMVLDEVHTI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2ipcC
MLGLLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPDLAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEG----KIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS---VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRLKVE
[Model]
2zj8: ARCHAEAL DNA HELICASE HJM APO STATE IN FORM 2 Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-688
2zj8A
13%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS--------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2zj8A
MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--------SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN----PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWE-----------------------DGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR-KGIIKAVVATPTLSAGINTPAFRVII-RDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV-----GEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG
[Model]
3peu: S. CEREVISIAE DBP5 L327V C-TERMINAL DOMAIN BOUND TO GLE1 H Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-682
3peuA
13%
>target
-------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------------------------
>3peuA
AIKQLYMDCKNEADKFDVLTELYGVM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGGR-K--------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD
[Model]
2i4i: CRYSTAL STRUCTURE OF HUMAN DEAD-BOX RNA HELICASE DDX3X Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-698
2i4iA
13%
>target
----------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----------------------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK----MFRRVLTIVQ-----SHCKLGLTATLLREDDKIADLNFL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVN------------------
>2i4iA
MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKE-K--RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--------GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE--IQMLARDFLDEYIFLAVGT--------SENITQKVVWV-----------------------EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLP-SDIEEYVHRIGRTGRN-L-GL-----A--TSFFNE--RNINITKDLLDLLVEAKQEVPSWLENMAYEHHY
[Model]
3l9o: CRYSTAL STRUCTURE OF MTR4, A CO-FACTOR OF THE NUCLEAR EXOS Solved by: X-RAY, Resolution: 3.39A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-665
3l9oA
13%
>target
------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA----KMFRRVLTIVQSHC-KLGLTATLLREDDKIADLNFLIGPKLY--EANWL--ELQKKGYIARV--QCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKM----------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH---------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3l9oA
DASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-NPDAGCLVMTTEILRSMLYRGS------EVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQ--HYLFPAHGDGIYLVVDEKSTFRE-----ENFQKA-MASIAKGD---IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ-EGFLKVLFATETFSIGLNMKT--V-V-FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEESICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISEQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACESSGDELLLTELIFNGNFNELKPEQAAALLSCEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRTQICKMTYEGSLIRMFKRLEELVKELVDIGNSSLKEKMEAVLKLIHRDIVSAGSLY
[Model]
2jlx: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP-VANADATE Solved by: X-RAY, Resolution: 2.2A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
334-735
2jlxB
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlxB
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
334-735
2jlxA
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlxA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
1a1v: HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLSTRANDED SDNA Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-705
1a1vA
13%
>target
--------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTS-----FDLPEANVLIQISSH----------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKV-------------------------------------------------------------------------------------------------------------------------
>1a1vA
PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPN---IRTGV-RTITTGSPITYSTYGKFLA------------DGGSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVT---------VPHP---------------N--IEEVALSTTGE-IPFYGK---------------AIP-----LE-VI-KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD-------VSVIPT-SGDVVVVATDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPG-------IYRFVAPGERPSGMFDSSV-LCECYDAG-AWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMS
[Model]
4b76: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
4b76A
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b76A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
351-665
4b76B
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b76B
GSVVIVGRIILSSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP--------------F---YGKA-----------IPI--E---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
3kqh: THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NSHELICASE REVEAL A RATCHET TRANSLOCATION MECHANISM Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
3kqhB
13%
>target
----------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------S------------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqhB
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIEE-------------------VALSSTGEI-PFYGKA---------------IP-----IET--IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIPT-SGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMS
[Model]
351-665
3kqhA
13%
>target
----------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQS---HCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------S------------HGGSRRQEAQRLGRILRAKKG---------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqhA
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIEE-------------------VALSSTGEI-PFYGKA---------------IP-----IET--IKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIPT-SGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMS
[Model]
2w74: MUTANT (K220R) OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP Solved by: X-RAY, Resolution: 2.74A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-666
2w74D
13%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFG---N--------GRARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF-RRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKF-RSCQFLIKY----HEQRGDKTIVFSDNVFALKHYAIKMNK-------------------------------------PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA-----------------------------------------------------------------------------------------------------------------------------------
>2w74D
NFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFRYDVTILVNGLPLVQIELKKRGVAIREAFNQINSLFKYLQLFVISNGTDTRYFANTTKRDRNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSEN-TAGLKRNLDKNKIIVTTIQKLNNLMKAE------SDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENAE-TTASVFGRELHSYVITDAIRDEKVLKFKVDYNDV--R----PQFK------SLETAFLHPMRIQEITQYILNNFRQKTHRKGFNAMLAVSSVDAAKAYYATFPLRIATIFSGEISDETFDTSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK-NQDIDLLIVVGMFLTGFDAPTLNTLF-VDKNLRYH-GLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAKRGFMTVVSELEQRFDFVKLFGEYLRAENILQNYDEFATLKAHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIVVFEVDLLKS
[Model]
330-663
2w74B
13%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFG----N-------GRARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE--AKD--KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR-VLTIVQSHCKLGLTATLLREDDKI--ADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCP-----MSPEFYR---EYLTTKTSKKMLLYVMNPS----------KFRSCQFLIKYHEQRGDKTIVFSDNVFAL-----------KHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK---------------------------------------------------------------------------------------------------------------------------------------------------------
>2w74B
NNFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFRYDVTILVNGLPLVQIELKKRGVAIREAFNQISENSLFKYLQLFVISNGTDTRYFANTTKRDRNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKA------ESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETERIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYY-ATF-KPLRIATIFSFAGEISDETFDTAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK-NQDIDLLIVVGMFLTGFDAPTLNTLF-VDKNLRYH-GLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALFAELQTIRLPADRKIQDYRSAYNDIRDWQRRWDDVVFEVDLLKSQ
[Model]
4a92: FULL-LENGTH HCV NS3-4A PROTEASE-HELICASE IN COMPLEX WITH AMACROCYCLIC PROTEASE INHIBITOR. Solved by: X-RAY, Resolution: 2.73A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
4a92B
13%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KM-FRR-VLTIVQS-H--CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK---P---FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSHG------------GSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>4a92B
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------V-PHPNIEEVA---LSNTGEIPF-----------------YGKA-----------IP--IE---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS--------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSA
[Model]
351-665
4a92A
13%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KM-FRR-VLTIVQS-H--CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK---P---FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSHG------------GSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>4a92A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------V-PHPNIEEVA---LSNTGEIPF-----------------YGKA-----------IP--IE---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS--------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSA
[Model]
3p4y: HELICASE DOMAIN OF REVERSE GYRASE FROM THERMOTOGA MARITIMA Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
3p4yA
13%
>target
--------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-DK---------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VL-TIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLY-VMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVS----KVADTSFDLPE-ANVLIQISSH-GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL------------------------------
>3p4yA
AAEFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQ-G--KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV-KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY--ERPKNLKPGIL-VVSSAT-------AKPRG--IRPLLFRDLLNFTVGRVSVARNITHVRISSRSKEKLVELLE---IFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLV---KGVSVIFEE--DEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSER
[Model]
2zj5: ARCHAEAL DNA HELICASE HJM COMPLEXED WITH ADP IN FORM 1 Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-688
2zj5A
13%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR----VLTIV-QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS--HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2zj5A
MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--------SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN----PEELAEWLNAELIVSDWRPV-------KLR-RGVFYQGFV-----TWE----------DGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR-KGIIKAVVATPTLSPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV-----GEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEVEAIFKFL
[Model]
4b75: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.53A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
351-665
4b75A
13%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b75A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT---V----PHPNIEEV---ALSNTGEIPF-----------------YGKA----------I-P--I-------E--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-------VIPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVLT
[Model]
351-665
4b75B
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b75B
GSVVIVGRIILSSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP--------------F---YGKA-----------IPI--E---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVLT
[Model]
2jlu: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA Solved by: X-RAY, Resolution: 2.2A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
334-735
2jluB
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jluB
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
334-735
2jluA
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jluA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
2jlv: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND AMPPNP Solved by: X-RAY, Resolution: 2.2A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
334-735
2jlvB
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlvB
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
334-735
2jlvA
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlvA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
3rrm: S. CEREVISIAE DBP5 L327V BOUND TO NUP159, GLE1 H337R, IP6 Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-682
3rrmA
13%
>target
---------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD--KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-----KMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLN-FLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH-----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------------------------
>3rrmA
GLAPELLKGIYAMKFQKPSKIQERALPLLLHNP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA---VRQYAKKIVPNANTLE-----LVNV---DAIKQLYMDCK----------------------NEADKFDVLTELYGVM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTN------DIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD
[Model]
3sqw: STRUCTURE OF MSS116P (NTE DELETION) BOUND TO SSRNA AND AMP Solved by: X-RAY, Resolution: 2.11A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-689
3sqwA
13%
>target
----------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSE-AKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ--------SHCKLGLTATLLREDDKIADLN-FLIG-PKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS-----------------------------------------------------------------------------------------------------------
>3sqwA
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKV---QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK---FA----------NSIF-----AAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGS-----S--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIR
[Model]
2fdc: STRUCTURAL BASIS OF DNA DAMAGE RECOGNITION AND PROCESSING BY UVRB: CRYSTAL STRUCTURE OF A UVRB/DNA COMPLEX Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
326-677
2fdcA
11%
>target
------LKPAAVLRPYQEKSLRKMFG---NGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTS--------------E---------AKD--K---------P-MGCGILVTTYSMITHT---------------------------------------------QKRSWEAEQ---------------------------------------TMRWLQEQEWGIMVLDEVHTI-P--AKMFR-------RVLTI---VQ----------------SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK-KGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT-----------------------------------------
>2fdcA
VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGV-KHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF--PHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFP-DD-FLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGP--Y---ELEH-SPGVV-E----QIIRPTGLLDPT--IDVR-PTK-----------------------GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVA-YLHERIEIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-----G-HVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRD
[Model]
556-661
2fdcB
13%
>target
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---KP--FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS-H--GG-SRRQEAQRLGRILR--------------------------------------------------
>2fdcB
VEGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHI--------EIIRDLR-LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIR
[Model]
1z3i: STRUCTURE OF THE SWI2/SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC RAD54 Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-708
1z3iX
13%
>target
----------------------------------------------------AAVLRPYQEKSLRKMFGN------GRARSGVIVLPCGAGKSLVGVTACCTV----------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD--------------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF--RRVLTIVQSHCKLGLTATLLREDD--KIADLNFL---------------------------------------------IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSK--------------------KMLLYVM-----------------------------------NPSKFRSCQFLIKYH-EQRGDKTIVFSDNVFALKHYAIKM---NKP--FIYGPTSQNERIQILQNFKFNSK-VNTIFV-SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITH---------------------------------------------------------------------------------------------
>1z3iX
LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNEVGKWLGGRV-QPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFR----------LHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK--YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDEQAMARVWRDGQ-----KKTCYIYRLLSTGTIEEKILQ-RQAH--KKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR
[Model]
2jlq: DENGUE VIRUS 4 NS3 HELICASE STRUCTURE, APO ENZYME. Solved by: X-RAY, Resolution: 2.4A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
335-735
2jlqA
13%
>target
----------YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC---C-TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIVQ--SH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlqA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP---GSTDPFPQ----------------S--NSPIEDIEREIPERS-----WN--T-------------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEY----PKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
2jlz: DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP Solved by: X-RAY, Resolution: 2.2A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
334-735
2jlzA
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlzA
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
334-735
2jlzB
13%
>target
---------PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC--TV--RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSE-AKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM--FRRVLTIV---QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ--------I--SSH---------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYS-YKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS--------------------------------------------------------------------------------
>2jlzB
GSAMGEPDYEVDEDI----FRKK--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR---GL---PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG---SIDPFPQ---------------S---NSPIEDIEREIPERS-----W-N----T----------GF----DWIT---DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTK-LTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED----DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDFKEFASGRK
[Model]
3i5x: STRUCTURE OF MSS116P BOUND TO SSRNA AND AMP-PNP Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-689
3i5xA
13%
>target
---------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSEAKD-------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-------QSHCK-LGLTATLLREDDKIADLNFLIGPKL-YEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------------------------------------------------------
>3i5xA
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE-------KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD--DKVQKLANNIMNKKECLFLDT---VDKNEPEAHERIDQSVVI----------SEKFA----NSIFAAVEHIKKQIKERD--SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGKEG-----SS--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
3pev: S. CEREVISIAE DBP5 L327V C-TERMINAL DOMAIN BOUND TO GLE1 A Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-682
3pevA
13%
>target
-------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD---------------------------------------
>3pevA
AIKQLYMDCKNEADKFDVLTELYGVM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGGR-K--------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD
[Model]
4b73: DISCOVERY OF AN ALLOSTERIC MECHANISM FOR THE REGULATION OFHCV NS3 PROTEIN FUNCTION Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
4b73A
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b73A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
351-665
4b73B
13%
>target
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-M-FRR-VLTIVQ---SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-----FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS--------SH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>4b73B
GSVVIVGRIILSSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPH-PNIEEVA---LSNTGEIP--------------F---YGKA-----------IPI--E---------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
3fmo: CRYSTAL STRUCTURE OF THE NUCLEOPORIN NUP214 IN COMPLEX WITTHE DEAD-BOX HELICASE DDX19 Solved by: X-RAY, Resolution: 2.51A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-487
3fmoB
13%
>target
---------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFR----RVLTIVQS-HCKLGLTATLL----------------------
>3fmoB
NLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA-EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
[Model]
3kqn: THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NSHELICASE REVEAL A RATCHET TRANSLOCATION MECHANISM Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
3kqnA
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kqnA
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
3i61: STRUCTURE OF MSS116P BOUND TO SSRNA AND ADP-BERYLLIUM FLUORIDE Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-689
3i61A
13%
>target
---------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA-CCTV---------RKRALVLCNSGVSVEQWKQQFKMWSTA----DDSMICRFTSEAKD-------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-------QSHCK-LGLTATLLREDDKIADLNFLIGPKL-YEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN--------KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS------------------------------------------------------------------------------------------------------------
>3i61A
SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE-------KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD--DKVQKLANNIMNKKECLFLDT---VDKNEPEAHERIDQSVVI----------SEKFA----NSIFAAVEHIKKQIKERD--SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-KDESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGKEG-----SS--VLFICKD--ELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRD
[Model]
1xtk: STRUCTURE OF DECD TO DEAD MUTATION OF HUMAN UAP56 Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-695
1xtkA
13%
>target
---------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTA-DDSMICRFTSEAKDK-------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFR----RVLTIVQS-HCKLGLTATLLREDDKIADLN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF---------------------
>1xtkA
GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL---GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR--PVCRKFMQDPMEIFVDDE---TKLTLHGLQQYYVKL-----------------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRILVATNLFGRGMDIERVNIAFNYDMP-EDSDTYLHRVARAGRFGTK-------GLAITFVSDEN-DAKILNDVQDRFEVNISELPDEIDISSYIEQT
[Model]
2zja: ARCHAEAL DNA HELICASE HJM COMPLEXED WITH AMPPCP IN FORM 2 Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-688
2zjaA
13%
>target
---------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLT----IV-QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISS--------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2zjaA
MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--------SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN----PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWE-----------------------DGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR-KGIIKAVVATPTLSAGINTPAFRVII-RDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV-----GEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG
[Model]
2kbf: SOLUTION STRUCTURE OF CARBOXYL-TERMINAL DOMAIN OF DBP5P Solved by: NMR, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
555-683
2kbfA
13%
>target
--------------------SKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT--------------------------------------
>2kbfA
TNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-------GVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKD
[Model]
3kqu: THREE CONFORMATIONAL SNAPSHOTS OF THE HEPATITIS C VIRUS NSHELICASE REVEAL A RATCHET TRANSLOCATION MECHANISM Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
3kquF
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquF
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kquB
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquB
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kquE
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquE
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kquA
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquA
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kquD
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquD
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
350-665
3kquC
13%
>target
---------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQS--HC-KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS----------SH----------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------
>3kquC
SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGVR-TITTGAPITYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-------PHPNIE-------------------EVALSSTGE-IPFYGKA-----------------IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDV-------SVIP-TSGDVIVVATDALMTGFT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA
[Model]
1cu1: CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
1cu1B
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>1cu1B
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
350-665
1cu1A
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>1cu1A
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
2g9n: STRUCTURE OF THE DEAD DOMAIN OF HUMAN EUKARYOTIC INITIATIOFACTOR 4A, EIF4A Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
332-503
2g9nB
12%
>target
-------------------------------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLV-GVTACCTVR----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAK-D-----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVL---TIVQSHCKLGLTATLLREDDKIADLNFLIGPK----
>2g9nB
IESNWNEIVDSFDDMNLSESLLRGIYAYGFEPSAIQQRAILPCI--G--YDVIAQAQSGTG-TATFAISILQQIELDLATQALVLAPTRELAQQIQ-VVMALGDYMGASCHACIGGTNVRAEVQLQMEAPHIIVGTPGRVFDMLNR----------RYLSPYIMFVLDEADEMLSRGFDQIYDIFQLNSNTQVVLLSATMPS---DVLEVTFMRDPIRILV
[Model]
332-504
2g9nA
12%
>target
---------------------------------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLV-GVTACCTVR----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD----KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRR---VLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL---
>2g9nA
GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEPSAIQQRAILPCI--G--YDVIAQAQSGTG-TATFAISILQQIELDLATQALVLAPTRELAQQIQV-VMALGDYMGASCHACIGNVRAEVQLQMEAPHIIVGTPGRVFDMLNR----------RYLSPYIMFVLDEADEMLSRGFDQIYDIFQLNSNTQVVLLSATMPS---DVLEVTFMRDPIRILV
[Model]
3o8b: VISUALIZING ATP-DEPENDENT RNA TRANSLOCATION BY THE NS3 HELHCV Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-665
3o8bB
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>3o8bB
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
350-665
3o8bA
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKM-FR-RVLTIVQS-HC--KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN---K---PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI--------SSH------------GGSRRQEAQRLGRILRAKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------
>3o8bA
GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV-RTITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSV---TV----PHPNIEEV---ALSNTGEIPFY-----------------GKA-----------I--PIE----AI----RGG-RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS-V-------IPTIGD-VVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT
[Model]
3ews: HUMAN DEAD-BOX RNA-HELICASE DDX19 IN COMPLEX WITH ADP Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-682
3ewsB
12%
>target
-------------------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDS-MICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MF----RRVLTIVQS-HCKLGLTATLLREDDKIADLN-FL-IGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD-------------------------
>3ewsB
EDRAAQSLLNKLIRSNLVDNTNQVEVLQRDYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLP-P--QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCS---------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED---SVWKFAQKVVPDPNVIKLKRE----EETLDTIKQYYVLCS----------------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRGKR---G--------LAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL
[Model]
330-682
3ewsA
12%
>target
------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MF----RRVLTIVQSH-CKLGLTATLLREDDKIADL-NF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD--------------------------
>3ewsA
MEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED---SVWKFAQKVVPDPNVIKLKREEE----TLDTIKQYYVLCS----------------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRGKR---G------LA--VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD
[Model]
2zu6: CRYSTAL STRUCTURE OF THE EIF4A-PDCD4 COMPLEX Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-682
2zu6C
13%
>target
------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLV-GVTACCTVR---KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM----FRRVLTIVQSH-CKLGLTATLLREDDKIADL-NF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD-------------------
>2zu6C
SNWNEIVDSFDDMNLSESLLRGIYAKPSAIQQRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQIELDLTQALVLAPTRELAQQIQKVVMALGC-H----ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS---DVLEVTKKFMRDPIRILVK-----------------------KEIRQFYINV---------EREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR-SGSSRVLITTDLLARGIDVQQVSLVINYDLP-TNRENYIHRIG--GRK-------G-VA--INMVTEEDKRTLRDIETFYNTSIEEM
[Model]
332-696
2zu6D
12%
>target
--------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ-SHCKLGLTATLLREDDKIADLNFLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-----------
>2zu6D
MEGVIESNWNEIVQRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL--EVTKKFMRDPIRILVKKEE----LTLEGIRQFYINVER----------------------EEWKLDTLCDLYE---TLTIQAVIFINTRRKVDWLTEKMHARDFTVSAMHG------RDVIMREFR-SGS-SVLITTDLLARGIDVQQVSLVINYDLP-TNRENYIHRIGRGGRKG--------VA--INMVTE--EDKRTLRDIETFYNTSIEEMPLNV
[Model]
335-696
2zu6A
12%
>target
-------YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD-----K--PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFR----RVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIG-PKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL----------
>2zu6A
MEGVIESNWNEAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL--EVTKKFMRDPIRILVKKE----ELTLEGIRQFYINV--ER--------------------EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDF--TVSAMHRDVIMREFR-SGSSRVLITTDLLARGIDVQQVSLVINYDLP-TNRENYIHRIGRGGRFGK--------GVAINMVTEE--DKRTLRDIETFYNTSIEEMPLN
[Model]
376-659
2zu6F
12%
>target
---------------RALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD------KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKP-FIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRI----------------------
>2zu6F
AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDC----HACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVLLSATMPSDVL--EVTKKF------------------MRDPGIRQFYINV----------------------EEWKLDTLCDLYE----TTIQAVIFINTRRKVDWLTEKMHARDFTVSAMHQKERDVIMREFR--GSSRVLITTDLLARGIDVQQVSLVINYDLPT-NRENYIHRIGVAINMVTEEDKRDIETFYNTIEEM
[Model]
4f91: BRR2 HELICASE REGION Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
332-688
4f91B
12%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKQQFKM-WSTADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK---MFRRVLTIV-------QSH-CKLGLTATLLREDDKIADLNFLIGPK---LY--EANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM---------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS-----SHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4f91B
ALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRR-WKQ---RKNV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN----AKDVAHWLGCSATSTFNFHPNV---------RPVPLELHIQGFNIS----------HTQTRLLSMAKP----VYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFS-SGAIQVVVASRSLCWGMNVAA-HLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD---EGRCVIM---CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD
[Model]
329-675
4f91B
12%
>target
----------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-R-------------KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA---KMFRRVL-------TIVQSHC-KLGLTATLLREDDKIADLNFLIGPK------LYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM------------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLI---Q-ISSHGG-----SRRQEAQRLGRILRAKKGAIAEEYNAFF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4f91B
ALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE----RTYT--QLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP----NYEDVATFLRVDPAKGLFYFDNSF---------RPVPLEQTYVGIT---------EKKAI-KRFQIMNE----IVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA-DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKG---EGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD
[Model]
3fho: STRUCTURE OF S. POMBE DBP5 Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
336-682
3fhoB
13%
>target
--QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF---RRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD----------------
>3fhoB
KIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--------FKIDAQIVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQLGDQSMRIKHLLPRNTQIVLFSATFSER---VEKYAER-----------------FAPNANEIRLKTE--EGIKQLYMDCQ---------SEEHKYNVLVELYG----TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTAQRDAIMDSFR-VGTSKVLVTT-----NIDVSQVNLVVNL----DDPQTYLHRIGRTGV---G-V-----S--INFVHDKKSWEEMNAIQEYFQRP
[Model]
335-681
3fhoA
12%
>target
-YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTV-----RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM---FRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ-------------------
>3fhoA
KIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT--------AFKIDAQIVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQLGDQSMRIKHLLPRNTQIVLFSATFSER---VEKYAER-----------------FAPNANEIRLKTEEG--IKQLY-----------MDCEEHKYNVLVELY-----GIGQSIIFCKKKDTAEEIARRMTADGHTVACLTAQRDAIMDSFR-VGTSKVLVTT-----NIDVSQVNLVVNLDD----PQTYLHRIGRTGG----------VS--INFVHDKKSWEEMNAIQEYFQRPIT
[Model]
3e1s: STRUCTURE OF AN N-TERMINAL TRUNCATION OF DEINOCOCCUS RADIODURANS RECD2 Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-488
3e1sA
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3e1sA
FTLTEVEGIGFLTADKLWDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAATGEGRIYLPHVLRAEKKLASLIRTLLATPPADAGNDDWAVPKKARKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARR----LGEVTGRTASTVHRLLG--------------------YGPQ---G-F-RHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRAHLEHHH
[Model]
3gp8: CRYSTAL STRUCTURE OF THE BINARY COMPLEX OF RECD2 WITH DNA Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-488
3gp8A
12%
>target
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3gp8A
QGLERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAEAAATGEGRIYLPHVLRAEKKLASLIRTLLATPPADDDWAVPKKARKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARR----LGEVTGRTASTVHRLLGYGPQ-----------------------G-FR-HNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNIFNGTLGMVLKAEGARLTVDNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRAHL
[Model]
2vsx: CRYSTAL STRUCTURE OF A TRANSLATION INITIATION COMPLEX Solved by: X-RAY, Resolution: 2.8A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-696
2vsxB
12%
>target
-------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQSH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------------
>2vsxB
QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGLR-----DAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLE-VTTKFMRNPVRILVKKDELTLE----GIKQFYVNVE----------------------EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLP-ANKENYIHRIGRKGV-------------AINFVTNE--DVGAMRELEKFYSTQIEELPSDIATL
[Model]
330-696
2vsxA
12%
>target
-------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF----RRVLTIVQSH-CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------------
>2vsxA
QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGLR-----DAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLE-VTTKFMRNPVRILVKKDELTLE----GIKQFYVNVE----------------------EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLP-ANKENYIHRIGRKGV-------------AINFVTNE--DVGAMRELEKFYSTQIEELPSDIATL
[Model]
2xgj: STRUCTURE OF MTR4, A DEXH HELICASE INVOLVED IN NUCLEAR RNAPROCESSING AND SURVEILLANCE Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-686
2xgjB
12%
>target
-------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA----KMFRRVLTIVQSHC-KLGLTATLLREDDKIADLNFLIGP----K--LYEANWLELQKKGYIARVQCAEVWCPMSPEFYRE-YLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2xgjB
HQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-NPDAGCLVMTTEILRSMLYRG------SEVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA----MEFAEWICKIHSQPCHIVYTNFRP-------TPLQHY-LFPAHGDGIYLVVDEKSTFREENFQKAMASISKGDIYKIVKMIWKKKYNPVVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ-EGFLKVLFATETFSIG---P-AKTVV-FTSVV-SGGEYIQMSGRAGRRGLDD--RG-IV--IMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLL
[Model]
330-664
2xgjA
12%
>target
--------------------------------------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA----KMFRRVLTIVQSHCK-LGLTATLLREDDKIADLNFLIGPK--LYEANWL--ELQKKGYIARVQCAEVW--CPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM--------------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ----ISSH---GGSRRQEAQRLGRILRAKK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2xgjA
MLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-PDAGCLVMTTEILRSMLYRGS------EVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQ--HYLFPAHGDGIYLVVDEKSTFRE------ENFQKAMASISGDIYKIVKMIWK---KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ-EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLL
[Model]
4f93: BRR2 HELICASE REGION S1087L, MG-ATP Solved by: X-RAY, Resolution: 2.92A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
333-688
4f93B
12%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKQQFKMWS-TADDSMICRFTSEAKDK---PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK---MFRRVLTIV-------QSH-CKLGLTATLLREDDKIADLNFLIGPK---LY--EANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM---------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQIS-----SHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4f93B
LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRR-WKQ---RKNV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN----AKDVAHWLGCSATSTFNFHPNV---------RPVPLELHIQGFNI---------S-HTQTRLLSMAKP----VYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFS-SGAIQVVVASRSLCWGMNVAA-HLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD---EGRCVIM---CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD
[Model]
329-675
4f93B
12%
>target
---------------------------------------------------------------------------AAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKD---KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA---KMFRRVL-------TIVQSHC-KLGLTATLLREDDKIADLNFLIGPK------LYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM------------------------------------------NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ----ISSHGG-----SRRQEAQRLGRILRAKKGAIAEEYNAFF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>4f93B
LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE----RTYT--QLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP----NYEDVATFLRVDPAKGLFYFDNSF---------RPVPLEQTYVGIT---------EKKAI-KRFQIMNE----IVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA-DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK---GEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD
[Model]
3g0h: HUMAN DEAD-BOX RNA HELICASE DDX19, IN COMPLEX WITH AN ATP-ANALOGUE AND RNA Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
3g0hA
12%
>target
------------------------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFR----RVLTIVQSH-CKLGLTATLLREDDKIADL-NF-LIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------
>3g0hA
SLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED---SVWKFAQKVVPDPNVIKLKREEE----TLDTIKQYYV----------------------LCSSRDEKFQALCNLYGAIT--IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR-------GLAVNMVDSKH-SMNILNRIQEHFNKKIERLD
[Model]
2w00: CRYSTAL STRUCTURE OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP Solved by: X-RAY, Resolution: 2.6A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
329-663
2w00B
12%
>target
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFGN-----------GRARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEA--KDK--PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA-KMFRRVLTIVQSHCKLGLTATLLREDDKI--ADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLT--TKTSKKMLLYVMNPSKFR-SCQFLIKYHEQ---------RGDKTIVFSDNVFALKHYAIKMNK-----------------PFIY--------------------------------------------GPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2w00B
NFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFENRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHENSLFKYLQLFVISNGTDTRYFANTTKRDKNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSP---DSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE----SD--LPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK-NQDIDLLIVVGMFLTGFDAPTLNTLF-VDKNLRY-HGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKETTDWDDVVFEVDLLKSQEINLDY
[Model]
329-666
2w00A
12%
>target
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAVLRPYQEKSLRKMFG----N-------GRARSGVIVLPCGAGKSLVGVTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEA--KDK--PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIP-AKMFRRVLTIVQSHCKLGLTATLLREDDKI--ADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCP---------MSPEFYREYLTTKTSKKMLLYVMNPSKFR-SCQFLIKYHEQ---------RGDKTIVFSDNVFALKHYAIKMNK-----------------PFIYG--------------------------------------------PTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2w00A
NFIVLDKYIKAEPTGDSYQSESDLERELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFENRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHSENSLFKYLQLFVISNGTDTRYFANTTKRDKNSFDFTMNWAKSDNTLIKDLKDFTATCFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSP---DSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE-S---DLP--VYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAA------ENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK-NQDIDLLIVVGMFLTGFDAPTLNTLF-VDKNLRY-HGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRTTDWDDVVFEVDLLKS
[Model]
3fht: CRYSTAL STRUCTURE OF HUMAN DBP5 IN COMPLEX WITH AMPPNP ANDRNA Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
331-696
3fhtB
12%
>target
---------------------------------------VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG-VTACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTADD-SMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MFR----RVLTIVQS-HCKLGLTATLLREDDKIADLN-FLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHG-----GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL--------
>3fhtB
NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKI---SEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW--KFAQKVVPDPNVIKLKRE----EETLDTIKQYYVLC----------------------SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR-------GLAVNMVDSK-HSMNILNRIQEHFNKKIERLD
[Model]
330-696
3fhtA
12%
>target
--------------------------------------AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV-TACCTVR-----KRALVLCNSGVSVEQWKQQFKMWSTAD-DSMICRFTSEAK---DKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK-MF----RRVLTIVQSH-CKLGLTATLLREDDKIADLNFLI-GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMN-----KPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSH-----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-------
>3fhtA
NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREE----ETLDTIKQYYVLC----------------------SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR-------GLAVNMVDSK-HSMNILNRIQEHFNKKIERL
[Model]
2z83: CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF JAPANESE ENCEPHALITIS VIRUS NS3 HELICASE/NUCLEOSIDE TRIPHOSPHATASEAT A RESOLUTION 1.8 Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
350-735
2z83A
12%
>target
-------RSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMF--RRVLTIV--QSHCK-LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNK-----PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQ------------------I-SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY----SRKRQRFLVNQGYSYKVITHLKGMDTDS----DLMYGTQEEQGQLLQLVLS-------------------------------------------------------------------------------
>2z83A
PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR---GL---PVRYQTG-------NEIVDVMCHATLTHR---------LMSP-NVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPP---GTTDP--F------PD--------S--NAPIHDLQDEIP--DRAW---------------------SSGYEWIT----EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYD----TEYPKCK-NGDWDFVITTDISA-NFGA---SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN-PNQVG---DEYHY---GGATSEDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRTADLPVWLAYKVASNGIQYTDRKWCFDGPRTNAILEDNIEVEIVTRMGERKILKPRWLDARVYADHQALKWFKDFAAGK
[Model]
3tmi: STRUCTURAL BASIS FOR RNA RECOGNITION AND ACTIVATION OF RIG Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
330-687
3tmiA
12%
>target
-AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDK------PMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKM-FRRVL-----TI-----VQSHCKLGLTATLLREDDKI--------ADLNFLIGPKLYEA---NWLELQKKGYIARVQCAEVWCPMSPEF---------------------------------------------------------YREYLTTK--------------------------------TSKKMLL------------YV----MNPSKFRSCQFLIKYH--EQRGDKTIVFSDNVFALKHYAIKMNK---------PFIYG--------PTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3tmiA
PFKPRNYQLELALPAMK---GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG-------TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENFGTQKYEQWIVTVQKACMVDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK--ADHNILIATSVADEGIDIAQCNLVILYEYV-GNVIKMIQTRGRG-RARGS--------K-CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM