SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] |
Alignment
TARGET 1 DDATKS SLKAIPLCKT KASPRDGDLW IERLKEEYEA IIAAVQNNKD
2z6oA 1 ma--deatrr vvseipvlkt nagprdrelw vqrlkeeyqs liryvennkn
TARGET hhhhh h hhh hhhhhhhhhh hhhhhhhhhh
2z6oA h hhhhhh hhh hhhhhhhhhh hhhhhhhhhh
TARGET 47 CDRDWFQLES NERGTKWFGK CWYFHNMVKY EFDVEFDIPI TYPVTAPEIA
2z6oA 49 adndwfrles nkegtrwfgk cwyihdllky efdiefdipi typttapeia
TARGET ssssss s ssssss sssss sss ssssssss ss
2z6oA h ssssss s ssssss sssss ssss ssssssss ss
TARGET 97 LPELDGKTAK MYRGGKICLS EHFKPLWARN TPKFGIAHAF ALGLGPWMAV
2z6oA 99 vpeldgktak myrggkiclt dhfkplwarn vpkfglahlm alglgpwlav
TARGET s s ss ssss hhhhhhhhh hhhhh hhhhhhhhhh
2z6oA s s ss ssss hhhhhhhhh hhhhh hhhhhhhhhh
TARGET 147 EIPDLIEKGL IQPK ---
2z6oA 149 eipdliqkgv iqhkekcn
TARGET hhhhhhhh
2z6oA hhhhhhhh sss
Template's ligands section
Ligands in the template:MG : 1.
Ligands in the template that will be assessed: MG168.
Model's ligands section
MG168
The ligand binds less than 3 template residues.
Given the properties calculated previously, the ligand A.MG168 will not be included in the final model.
MG168: conservation:False, RMSD:False, included: False
No ligands were included in the model.
Quaternary Structure Annotation of the Template
2z6o is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 2z6o.pdb1.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER)
The target structure was calculated as SINGLE CHAIN
The corresponding reliability score is 0.424 (>0.5 indicates similarity)
Template Selection
- Start SMR-Pipeline for:e83dbe105fdbac055979294d7a1b618a on BC2-cluster at Mon May 6 15:38:47
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 1 go for
modeling ...
- No A3m found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *******************************************************************************
- building model based on 2z6oA (2-161) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:e83dbe105fdbac055979294d7a1b618a on BC2-cluster at Mon May 6 15:39:55
2013
Template Search
| Template Description |
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2z6p: CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1 Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST |
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2k07: SOLUTION NMR STRUCTURE OF HUMAN E2-LIKE UBIQUITIN-FOLD MODIFIER CONJUGATING ENZYME 1 (UFC1). NORTHEAST STRUCTURAGENOMICS CONSORTIUM TARGET HR41 Solved by: NMR, Identified by BLAST |
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3evx: CRYSTAL STRUCTURE OF THE HUMAN E2-LIKE UBIQUITIN-FOLD MODIFIER CONJUGATING ENZYME 1 (UFC1). NORTHEAST STRUCTURAGENOMICS CONSORTIUM TARGET HR41 Solved by: X-RAY, Resolution: 2.54A, Identified by BLAST |
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2z6o: CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1 Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST |
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3kpa: UBIQUITIN FOLD MODIFIER CONJUGATING ENZYME FROM LEISHMANIAMAJOR (PROBABLE) Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.