SWISS-MODEL Repository - Model Details

Model Overview
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1
1744

Sequence
UniProt Q04205
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
SH2
PTB
PTEN_C2

Model 3D Structure
Model information:
Modelled residue range: 1470 to 1615
Based on template: [ 2bbu ]  
Sequence Identity [%]: 18%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1470                   KYWY KPDISREQAI ALLKDREPGA FIIRDSHSFR
2bbuA     1     eyqlvvnavr klqe--sgfy wsavtggean lllsaepagt flirdssdqr
                                                                      
TARGET                                     hhhhh hhhhh         sssss s
2bbuA            hhhhhhhhh hhhh            hhhhh hhhhh         sssss s


TARGET    1504  GAYGLAMKVA SPPPTVMQQN KKGDITNELV RHFLIETSPR GVKLKGCP--
2bbuA     49    hfftlsvkt- ---------- ------qsgt knlriqcegg sfslqsdprs
                                                                      
TARGET          sssssss                          sss  sss   sss       
2bbuA           sssssss                          sss  sss   sss       


TARGET    1552  --NEPNFGCL SALVYQHSIM PLALPCKLVI PDRDPMEEKK DAASTTNSAT
2bbuA     82    tqpvprfdcv lklvhhympp pg--tpsfsl pptepssevp eqp-----pa
                                                                      
TARGET                     hhhhhhh                                    
2bbuA                      hhhhhhh                                    


TARGET    1600  DLLKQGAACN VLFINS --- ---------- --                   
2bbuA     125   qalpgstpkr ayyiysggek iplvlsrpls sn                   
                                                                      
TARGET                                                                
2bbuA                         sss  ss s

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b8c01060f2cc1ffcc1cc07475ec61b8e on BC2-cluster at Mon Sep  1 01:51:19 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>b8c01060f2cc1ffcc1cc07475ec61b8e
********************************************************************************
>2gjyA Evalue:2.51018e-75 SeqID:100.000 Method:BLAST Type:PDB
-------------------------------------------------------------------------*******
>1d5rA Evalue:0 SeqID:29.508 Method:HHSEARCH Type:MODEL
---*************----------------------------------------------------------------
>1mw4A Evalue:3.3E-14 SeqID:21.374 Method:HHSEARCH Type:MODEL
------------------------------------------------------------------******--------
>2bbuA Evalue:7.7E-13 SeqID:18.667 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------------******-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2gjyA          1605           1744           BLAST          PDB            
1d5rA          61             359            HHSEARCH       BUILT          
1mw4A          1455           1581           HHSEARCH       BUILT          
2bbuA          1470           1615           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b8c01060f2cc1ffcc1cc07475ec61b8e on gopt-69.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 02:03:56 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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