SWISS-MODEL Repository - Model Details

Model Overview
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1
276

Sequence
UniProt Q04507
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
AMO

Model 3D Structure
Model information:
Modelled residue range: 12 to 248
Based on template: [ 1yew ]  
Sequence Identity [%]: 50%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    12      AAKMPPEA VHMSRLIDAV YFPILIILLV GTYHMHFMLL AGDWDFWMDW
1yewB     7       avrshaea vqvsrtidwm alfvvffviv gsyhihamlt mgdwdfwsdw
                                                                      
TARGET                hhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhh            
1yewB                 hhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhh            


TARGET    60    KDRQWWPVVT PIVGITYCSA IMYYLWVNYR QPFGATLCVV CLLIGEWLTR
1yewB     55    kdrrlwvtvt pivlvtfpaa vqsylweryr lpwgatvcvl glllgewinr
                                                                      
TARGET             hhhhhhh hhhhhhhhhh h   hhhh      hhhhhhh hhhhhhhhhh
1yewB              hhhhhhh hhhhhhhhhh h   hhhh      hhhhhhh hhhhhhhhhh


TARGET    110   YWGFYWWSHY PINFVTPGIM LPGALMLDFT LYLTRNWLVT ALVGGGFFGL
1yewB     105   yfnfwgwtyf pinfvfpasl vpgaiildtv lmlsgsylft aivgamgwgl
                                                                      
TARGET          hh                     hhhhhhhhh hh    hhh    hhhhhhhh
1yewB           hhhhhh                 hhhhhhhhh hh    hhhh hhhhhhhhhh


TARGET    160   LFYPGNWPIF GPTHLPIVVE GTLLSMADYM GHLYVRTGTP EYVRHIEQGS
1yewB     155   ifypgnwpii aplhvpveyn gmlmsiadiq gynyvrtgtp eyirmvekgt
                                                                      
TARGET          hhhhhhhhhh hh  sssss   ssssshhhh hhh                  
1yewB           hhhhhhhhhh hh  sssss   ssssshhhh hhh                  


TARGET    210   LRTFGGHTTV IAAFFSAFVS MLMFTVWWYL GKVYCTAFF            
1yewB     205   lrtfgkdvap vsaffsafms iliyfmwhfi grwfsnerfl           
                                                                      
TARGET                                    h   hh h   hhh              
1yewB                                     hh   h h   hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 213dbabcf9a35dceac594840275e5fbe on BC2-cluster at Fri Aug 29 16:13:48 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>213dbabcf9a35dceac594840275e5fbe
********************************************************************************************
>1yewB Evalue:0 SeqID:50.211 Method:HHSEARCH Type:MODEL
----*******************************************************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1yewB          12             248            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 213dbabcf9a35dceac594840275e5fbe on gopt-77.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 16:15:59 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.