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SWISS-MODEL Repository - Model Details

Model Overview

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1178

Sequence

UniProt

Q05920

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

	CPSase_L_chain
	Biotin_lipoyl
	HMGL-like
	PYC_OADA
	Biotin_carb_C
	CPSase_L_D2

Model 3D Structure

	Model information:
	Modelled residue range:	494 to 1097
	Based on template:	[ 3bg3 ]
	Sequence Identity [%]:	96%
	Model date:	2013-02-22
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (3bg3): TETRAMER Model built: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: ALA: 1, BTI: 1, MN: 1, PYR: 1. Ligands in the model: MN: 1

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1       QNRAQKLL HYLGHVMVNG PTTPIPVNVS PSPVDPAVPV VPIGPPPAGF
3bg3B     494     qnraqkll hylghvmvng pttpipvkas psptdpvvpa vpigpppagf
                                                                      
TARGET               hhhhh hhhhhhhh                                   
3bg3B                hhhhh hhhhhhhhh                                  


TARGET    49    RDILLREGPE GFARAVRNHQ GLLLMDTTFR DAHQSLLATR VRTHDLKKIA
3bg3B     542   rdillregpe gfaravrnhp glllmdttfr dahqsllatr vrthdlkkia
                                                                      
TARGET          hhhhh   hh hhhhhhhh     sssss    hhhhhh       hhhhh   
3bg3B           hhhhh   hh hhhhhhhh     sssss    hhhhhh       hhhhh   


TARGET    99    PYVAHNFNKL FSMENWGGAT FDVAMRFLYE CPWRRLQELR ELIPNIPFQM
3bg3B     592   pyvahnfskl fsmenwggat fdvamrflye cpwrrlqelr elipnipfqm
                                                                      
TARGET          hhhhh        sss    h hhhhhh       hhhhhhhh hh    ssss
3bg3B           hhhhhh       sss    h hhhhhh       hhhhhhhh hh    ssss


TARGET    149   LLRGANAVGY TNYPDNVVFK FCEVAKENGM DVFRVFDSLN YLPNMLLGME
3bg3B     642   llrganavgy tnypdnvvfk fcevakengm dvfrvfdsln ylpnmllgme
                                                                      
TARGET          ssss           hhhhhh hhhhh      ssssss       hhhhhhhh
3bg3B           ssss            hhhhh hhhhhhh    ssssss       hhhhhhhh


TARGET    199   AAGSAGGVVE AAISYTGDVA DPSRTKYSLE YYMGLAEELV RAGTHILCIK
3bg3B     692   aagsaggvve aaisytgdva dpsrtkyslq yymglaeelv ragthilci-
                                                                      
TARGET          hhhh   sss sssss               h hhhhhhhhhh hh   sssss
3bg3B           hhhh   sss sss                 h hhhhhhhhhh hh   ssss 


TARGET    249   DMAGLLKPAA CTMLVSSLRD RFPDLPLHIH THDTSGAGVA AMLACAQAGA
3bg3B     742   dmagllkpta ctmlvsslrd rfpdlplhih thdtsgagva amlacaqaga
                                                                      
TARGET                 hhh hhhhh   h       sssss        hhh hhhhhhh   
3bg3B                  hhh hhhhh   h       sssss        hhh hhhhhhh   


TARGET    299   DVVDVAVDSM SGMTSQPSMG ALVACTKGTP LDTEVPLERV FDYSEYWEGA
3bg3B     792   dvvdvaadsm sgmtsqpsmg alvactrgtp ldtevpmerv fdyseywega
                                                                      
TARGET          sssss              hh hhhh              hhh hhhhhhhhhh
3bg3B           sssss              hh hhhh              hhh hhhhhhhhhh


TARGET    349   RGLYAAFDCT ATMKSGNSDV YENEIPGGQY TNLHFQAHSM GLGSKFKEVK
3bg3B     842   rglyaafdct atmksgnsdv yeneipggqy tnlhfqahsm glgskfkevk
                                                                      
TARGET          hh                 hh hhh   hhhh h                hhh 
3bg3B           hh                 hh hhh   hhhh h                hhh 


TARGET    399   KAYVEANQML GDLIKVTPSS KIVGDLAQFM VQNGLSRAEA EAQAEELSFP
3bg3B     892   kayveanqml gdlikvtpss kivgdlaqfm vqnglsraea eaqaeelsfp
                                                                      
TARGET            hhhhhhh          hh hhhhhhhhhh hhh                  
3bg3B             hhhhhhh          hh hh   hhhhh hhh                  


TARGET    449   RSVVEFLQGY IGIPHGGFPE PFRSKVLKDL PRIEGRPGAS LPPLNLKELE
3bg3B     942   rsvveflqgy igvphggfpe pfrskvlkdl prvegrpgas lppldlqale
                                                                      
TARGET          hhhhhhhh            h hhhhhhh           hhh       hhhh
3bg3B           hhhhhhhh            h hhhhhhh           hhh      hhhhh


TARGET    499   KDLIDRHGEE VTPEDVLSAA MYPDVFAQFK DFTATFGPLD SLNTRLFLQG
3bg3B     992   kelvdrhgee vtpedvlsaa mypdvfahfk dftatfgpld slntrlflqg
                                                                      
TARGET          hhhhhh        hhhhhhh h   hhhhhh hhhhh         hhhhh  
3bg3B           hhhhh         hhhhhhh    hhhhhhh hhhhh         hhhhh  


TARGET    549   PKIAEEFEVE LERGKTLHIK ALAVSDLNRA GQRQVFFELN GQLRSILVKD
3bg3B     1042  pkiaeefeve lergktlhik alavsdlnra gqrqvffeln gqlrsilvkd
                                                                      
TARGET                sss        ssss sssss      ssssssssss  sssssssss
3bg3B                 sss        ssss sssss        ssssssss  sssssss  


TARGET    599   TQAMKE                                                
3bg3B     1092  tqamke-                                               
                                                                      
TARGET                                                                
3bg3B

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ALA: 1, BTI: 1, MN: 1, PYR: 1. 
Ligands in the template that will be assessed: MN2001. 
Model's ligands section 
MN2001 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.300 
Given the properties calculated previously, the ligand B.MN2001 will be included in the final model. 
MN2001: conservation:True, RMSD:True, included: True 
 
The new model with the included ligands was saved successfully.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 3bg3 is annotated as TETRAMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3bg3.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Not all chains of the complex were                      identified 
 Please use the advancend features of the SwissModel Project Mode 
   
 The target structure was calculated as SINGLE CHAIN 
 To build the complex the following chains of the complex has been additionally identified: 3bg3C

Template Selection

 - Start SMR-Pipeline for:1aac81ab4aeb4d94d9863970e86f0855 on BC2-cluster at Fri Feb 22 14:10:44
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  2
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with H found
 - No template with I found
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 - No template with B found
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 - No template with H found
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 - No template with B found
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 - No template with B found
 - No template with D found
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 - No template with B found
 - No template with C found
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 - No template with E found
 - No template with F found
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 - No template with B found
 - No template with D found
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 - No template with B found
 - No template with D found
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 - No template with H found
 - No template with B found
 - No template with D found
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 - No template with H found
 - No template with B found
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 - No template with C found
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 - No template with D found
 - No template with B found
 - No template with B found
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 - No template with B found
 - No template with A found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:5): model based on new templates
 - Send 5 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                   *****************************************
 - building model based on 3bg3B (494-1097) was successful 
 -                                   ***********************************************
 - building model based on 3bg3A (494-1178) was successful 
 -    *******************************
 - building model based on 2dzdA (37-488) was successful 
 -    ************************************************************************
 - building model based on 3hblC (37-1096) was not successful go to next best template
 -    ************************************************************************
 - building model based on 3bg5C (37-1096) was not successful go to next best template
 -    ************************************************************************
 - building model based on 3hb9C (37-1096) was not successful go to next best template
 -   ************************************************************************
 - building model based on 3tw6C (36-1091) was not successful go to next best template
 -                 **********************************************************
 - building model based on 3tw6A (237-1091) was successful 
 -   ************************************************************************
 - building model based on 2qf7B (36-1091) was not successful go to next best template
 -   ************************************************************************
 - building model based on 3tw7A (36-1091) was not successful go to next best template
 -   ****************************************************************************
 - building model based on 3tw6B (36-1157) was not successful go to next best template
 -    ******************************************************************************
 - building model based on 3hblA (37-1178) was not successful go to next best template
 -    ******************************************************************************
 - building model based on 3bg5A (37-1178) was not successful go to next best template
 -    ******************************************************************************
 - building model based on 3hb9A (37-1178) was not successful go to next best template
 -   *****************************************************************************
 - building model based on 3tw6D (36-1172) was not successful go to next best template
 -   ************************************************************************
 - building model based on 3tw7B (36-1091) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 3hblB (239-1178) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 3hblD (239-1178) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 2qf7A (235-1174) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 3bg5B (239-1178) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 3bg5D (239-1178) was not successful go to next best template
 -                 ****************************************************************
 - building model based on 3hb9B (239-1178) was not successful go to next best template
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:1aac81ab4aeb4d94d9863970e86f0855 on BC2-cluster at Fri Feb 22 14:50:50
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

3bg3: CRYSTAL STRUCTURE OF HUMAN PYRUVATE CARBOXYLASE (MISSING THE BIOTIN CARBOXYLASE DOMAIN AT THE N-TERMINUS)
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

494-1097	3bg3C	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE >3bg3C QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCI-DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE [Model]
494-1178	3bg3D	96%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVAAGDKVAKGQPLCVLSAMKMETVVTSPMEGTIRKVHVTKDMTLEGDDLILEIE >3bg3D QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCI-DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE-----KALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE [Model]
494-1178	3bg3A	96%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVAAGDKVAKGQPLCVLSAMKMETVVTSPMEGTIRKVHVTKDMTLEGDDLILEIE >3bg3A QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCI-DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE-----KALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE [Model]
494-1097	3bg3B	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE >3bg3B QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCI-DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKE [Model]

3bg9: CRYSTAL STRUCTURE OF HUMAN PYRUVATE CARBOXYLASE (MISSING THE BIOTIN CARBOXYLASE DOMAIN AT THE N-TERMINUS) F1077A MUTANT
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

494-1094	3bg9A	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQA >3bg9A QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVAFELNGQLRSILVKDTQA [Model]
494-1094	3bg9B	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQA >3bg9B QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVAFELNGQLRSILVKDTQA [Model]
494-1094	3bg9D	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQA >3bg9D QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVAFELNGQLRSILVKDTQA [Model]
494-1094	3bg9C	97%	>target QNRAQKLLHYLGHVMVNGPTTPIPVNVSPSPVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFNKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQA >3bg9C QNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIGPPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVAFELNGQLRSILVKDTQA [Model]

2dzd: CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE DOMAIN OF PYRUVATE CARBOXYLASE
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

37-488

2dzdA

60%

[Model]

3vot: CRYSTAL STRUCTURE OF L-AMINO ACID LIGASE FROM BACILLUS LIC
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	35-454	3votA	16%	>target -KPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTRAYSE-----ALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHL--YERDCSIQRRHQKVVEIAPATHLDPQLRSRLTSDSVKLAKQVGYE-NAGTVEFLVDKHGKHYFIEVNSRL---QVEHTVTEEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEVFRSG----EGMGI-RLDNASAFQGAVISPHYDS--LLVKVIAHGKDHPTAATKMSRALAEFRVRG-- >3votA TKRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFED-EEAA--MDVVRQTFVEFPFDGVMTLFEPALP--FTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPV-F-HEFHTLADLEN--RKLSYPLVVKPVN-----GVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGP-EFAIETLSI-QGNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE-F-EGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQ-FMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELHIIYQN [Model]
	35-453	3votB	15%	>target -KPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGD-QYGNILHLYERDCSIQRRHQKVVEIAPATHLDPQLRSRLTSDSVKLAKQVGYE-NAGTVEFLVDKHGKHYFIEVNSRLQVEH---TVTEEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEVFRS----GEGMGI-RLDNASAFQGAVISPHY--DSLLVKVIAHGKDHPTAATKMSRALAEFRVR--- >3votB TKRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFE-DEEAA--MDVVRQTFVEFPFDGVMTLFEPAL--PFTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPV-F-HEFHTLADL----EKLSYPLVVKPVN-----GVVRVDDRKELEEAVRKVT----------GIVAEQFIDGP-EFAIETLSIQGNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE-FE-GEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQ-FMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELHIIYQN [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.