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UniProt Q09621
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Q09621: 6239.ZK945.1

Link to: [ InterPro ]

Model 3D Structure
Model information:
Modelled residue range: 103 to 181
Based on template: [ 1yqs ]  
Sequence Identity [%]: 37%
Model date: 2015-05-08
Revision date: 2015-05-05

Quaternary structure information: [details]
Template (1yqs): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: BSA: 2, GOL: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]


TARGET    1                                           IVDLQ GGYADKASGR
1yqsA     3     lpapddtglq avlhtalsqg apgamvrvdd ngt--ihqls egvadratgr
TARGET                                                       ssss   ss
1yqsA                hhhhh hhhhhhhhh   sssssssss s s  sssss sssss   ss

1yqsA     51    aitttdrfrv gsvtksfsav vllqlvdegk ldldasvnty lpgllpd--d
TARGET          ss           hhhhhhhh hhhhhhhh          hhh           
1yqsA           ss     sss   hhhhhhhh hhhhhhhh          hhh           

TARGET    66    NITIDWLMSH RAGL ----- ---------- ---------- ----------
1yqsA     99    ritvrqvmsh rsglydytnd mfaqtvpgfe svrnkvfsyq dlitlslkhg
TARGET             hhhhh                                              
1yqsA              hhhhhh         hhh h   hhhhhh hh       h hhhhhhh   

TARGET          ---------- ---------- ---------- ---------- ----------
1yqsA     149   vtnapgaays ysntnfvvag mliekltghs vateyqnrif tplnltdtfy
1yqsA                         h   hhh hhhhhhh    hhhhhhh    hhh       

TARGET          ---------- ---------- ---------- ---------- ----------
1yqsA     199   vhpdtvipgt hangyltpde aggalvdste qtvswaqsag avisstqdld
1yqsA                         ssss         sss               sss hhhhh

TARGET          ---------- ---------- ---------- ---------- ----------
1yqsA     249   tffsalmsgq lmsaaqlaqm qqwttvnstq gyglglrrrd lscgisvygh
1yqsA           hhhhhhhh      hhhhhhh    sss  ss sss  sssss s   ssssss

TARGET          ---------- ---------- ---------- ---------- --------- 
1yqsA     299   tgtvqgyyty afaskdgkrs vtalantsnn vnvlntmart lesafcgkp 
1yqsA           ssss sssss ssss   sss ssssssss   hhhhhhhhhh hhhhh     


Template's ligands section
Ligands in the template: BSA: 2, GOL: 2.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.

Quaternary Structure Annotation of the Template
1yqs is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1yqs.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 37.975) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN

Template Selection
 - Start SMR-Pipeline for:fca9b26a69ff266221fd98030a31dfaf on BC2-cluster at Thu May  7 22:29:00

 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with A found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:4): model based on new templates
 - Send 4 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                  *************
 - building model based on 1yqsA (103-181) was successful 
 -                   ******************
 - building model based on 1o07B (109-215) was successful 
 -                   ***************************
 - building model based on 1i5qB (109-266) was successful 
 -             **************************************************************
 - building model based on 3zytA (68-434) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
 - Finish SMR-Pipeline for:fca9b26a69ff266221fd98030a31dfaf on BC2-cluster at Thu May  7 22:31:49

Template Description
Match Chain SeqId

Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

119-154 3p09B 11%
91-154 3p09A 9%


If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.

SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.