SWISS-MODEL Repository - Model Details

Model Overview
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1
410

Sequence
UniProt Q0H8X2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
GIY-YIG
NUMOD1
NUMOD3
Cytochrom_B_N_2

Model 3D Structure
Model information:
Modelled residue range: 5 to 132
Based on template: [ 2fyu ]  
Sequence Identity [%]: 64%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    5           KTHP ILGLANSYLI DSPQPSNISY MWNFGSLLGV CLIIQILTGV
2fyuC     2     tnir--kshp lmkivnnafi dlpapsniss wwnfgsllgi clilqiltgl
                                                                      
TARGET                   h hhhhhhhh              hhhhhhhhhh hhhhhhhhhh
2fyuC                    h hhhhhhhh    sssss      hhhhhhhhh hhhhhhhhhh


TARGET    49    FLAMHYTPSV DLAFISVEHI MRDVNYGWLI RYLHANTASF FFIFVYLHIG
2fyuC     50    flamhytsdt ttafssvthi crdvnygwii rymhangasm fficlymhvg
                                                                      
TARGET          hhh          hhhhhhhh hh     hhh hhhhhhhhhh hhhhhhhhhh
2fyuC           hhh          hhhhhhhh hh     hhh hhhhhhhhhh hhhhhhhhhh


TARGET    99    RGLYYGSYKS PRTLLWSIGV IILVLMMAIA FLGF ----- ----------
2fyuC     100   rglyygsytf let--wnigv illltvmata fmgyvlpwgq msfwgatvit
                                                                      
TARGET          hhhhh            hhhh hhhhhhhhhh hhh                  
2fyuC           hhhhh      hhh  hhhhh hhhhhhhhhh hhhhhh sss hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
2fyuC     148   nllsaipyig tnlvewiwgg fsvdkatltr ffafhfilpf iimaiamvhl
                                                                      
TARGET                                                                
2fyuC           hhhh     h hhhhhhhh       hhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
2fyuC     198   lflhetgsnn ptgissdvdk ipfhpyytik dilgalllil almllvlfap
                                                                      
TARGET                                                                
2fyuC           hhhh               ss sss     hh hhhhhhhhhh hhhhhhh   


TARGET          ---------- ---------- ---------- ---------- ----------
2fyuC     248   dllgdpdnyt panplntpph ikpewyflfa yailrsipnk lggvlalafs
                                                                      
TARGET                                                                
2fyuC           hh    hh s ss                hhh hhhhh    h hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
2fyuC     298   ililalipll htskqrsmmf rplsqclfwa lvadlltltw iggqpvehpy
                                                                      
TARGET                                                                
2fyuC           hhhhhhhhh              hhhhhhhhh hhhhhhhhhh h      hhh


TARGET          ---------- ---------- ---------- --                   
2fyuC     348   itigqlasvl yfllilvlmp tagtienkll kw                   
                                                                      
TARGET                                                                
2fyuC           hhhhhhhhhh hhhhh   hh hhhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1dc0d876df367be5ed1d1c0c71d470fa on BC2-cluster at Fri Aug 29 15:58:36 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>1dc0d876df367be5ed1d1c0c71d470fa
**********************************************************************************
>2fyuC Evalue:1.28394e-44 SeqID:64.062 Method:BLAST Type:MODEL
-*************************--------------------------------------------------------
>1ln0A Evalue:5.4E-12 SeqID:27.174 Method:HHSEARCH Type:MODEL
---------------------------------------*************-****-------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2fyuC          5              132            BLAST          BUILT          
1ln0A          198            285            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1dc0d876df367be5ed1d1c0c71d470fa on gopt-61.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 16:01:43 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.