SWISS-MODEL Repository - Model Details

Model Overview
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1
272

Sequence
UniProt Q0IAC3
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
ABC_tran

Model 3D Structure
Model information:
Modelled residue range: 18 to 271
Based on template: [ 2olj ]  
Sequence Identity [%]: 32%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    18         VSIQN ATISYGDFEA VKNVYCDIPR GQVTAFIGPS GCGKSTILRA
2oljA     65535  lqm--idvhq lkksfgslev lkginvhire gevvvvigps gsgkstflrc
                                                                      
TARGET               sssss sssss  sss ssssssss    ssssss       hhhhhhh
2oljA             s  sssss sssss  sss ssssssss    ssssss       hhhhhhh


TARGET    63    LNRMNDLIEG CSLKGRILFD GADLYAPEVD PVEVRRRIGM VFQQPNPF-P
2oljA     47    lnlledfd-- ---egeiiid ginlkakdtn lnkvreevgm vfqrfnlfph
                                                                      
TARGET          h              sssss   sss       hhhhhhh ss sss       
2oljA           h      s      sssssss  sss        hhhhhh ss sss       


TARGET    112   KSIYENIAFG -ARINGYNGD -MDELVERSL RQAAIWDECK DKLNESGNSL
2oljA     92    mtvlnnitla pmkvrkwpre kaeakamell dkvglk---- dkahaypdsl
                                                                      
TARGET            hhhhhh                 hhhhhhh hh                   
2oljA             hhhhhhhh hhhh    hh hhhhhhhhhh hh                   


TARGET    160   SGGQQQRLCI ARTIAIEPEV ILMDEPCSAL DPISTLKIEE TIHELKK-SF
2oljA     138   sggqaqrvai aralamepki mlfdeptsal dpemvgevls vmkqlanegm
                                                                      
TARGET           hhhhhhhhh hhhhh    s sssss       hhhhhhhhh hhhhh     
2oljA            hhhhhhhhh hhhhh    s sssss           hhhhh hhhhhhh   


TARGET    209   TIVIVTHNMQ QAVRVSDMTA FFNAEAVDGE SGKVGYLVEF NDTDKIFNAP
2oljA     188   tmvvvthemg farevgdrvl fmd------- ---ggyiiee gkpedlfdrp
                                                                      
TARGET           sssss  hh hhhh   sss ss                 ss s hhhhhh  
2oljA           ssssss  hh hhhh   sss sss             sssss s hhhhhh  


TARGET    259   SQQATQDYVS GRF                                        
2oljA     228   qhertkafls kvf-                                       
                                                                      
TARGET            hhhhhhhh                                            
2oljA             hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1f0f321579d268a25d5dee6fae442ab0 on BC2-cluster at Sun Aug 31 15:12:37 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1f0f321579d268a25d5dee6fae442ab0
*******************************************************************************************
>2oljA Evalue:0 SeqID:32.558 Method:HHSEARCH Type:MODEL
------*****************--***********************--***************************---***********


TEMPLATE ID    START          STOP           METHOD         STATUS         
2oljA          18             271            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1f0f321579d268a25d5dee6fae442ab0 on gopt-61.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 15:15:07 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.