SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
264

Sequence
UniProt Q0J9W0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Cyclin

Model 3D Structure
Model information:
Modelled residue range: 21 to 172
Based on template: [ 2pk9 ]  
Sequence Identity [%]: 23%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    21                   PPPPEL DMVARAVQRL VARNDAVEAL SGGGEAAAGL
2pk9B     17    gipkvilpad fnkcsrtdlv vlisrmlvsl iainensitl t---------
                                                                      
TARGET                           hhhh hhhhhhhhhh hhh   hhhh hhhhh     
2pk9B             sssss         hhhhh hhhhhhhhhh hhhhh                


TARGET    57    GAGMAAFEAA RGAPAPRIGV AQYLERVHRY AGLEPECYVV AYAYVDMAAH
2pk9B     66    -----ryh-- -skippnisi fnyfirltkf sslehcvlmt slyyidllqt
                                                                      
TARGET           sss                h hhhhhhhhhh     hhhhhh hhhhhhhhhh
2pk9B                               h hhhhhhhhhh     hhhhhh hhhhhhhhhh


TARGET    107   RRPAAAVASR NVHRLLLACL LVASKVLDDF HHNNAFFARV GGVSNAEMNR
2pk9B     108   vypdftlnsl tahrflltat tvatkglcds fstnahyakv ggvrchelni
                                                                      
TARGET             sss      hhhhhhhhh hhhhhh        hhhhhhh h   hhhhhh
2pk9B                       hhhhhhhh    hhhh        hhhhhhh h   hhhhhh


TARGET    157   LELELLAVLD FEVMLS --- ---------- ---------- ----------
2pk9B     158   lendflkrvn yriiprdhni tlcsieqkqk kfvidknsyv nrpksgynvl
                                                                      
TARGET          hhhhhhhhh                                             
2pk9B           hhhhhhhh          hhh hhhhhh                        hh


TARGET          ---------- ---------- ---------- -                    
2pk9B     218   dkyyrrivql vgsfnaspdk srkvdyvlpp n                    
                                                                      
TARGET                                                                
2pk9B           hhhhhhhhhh h              sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 7222e053e08bdbaac8b3dc6820ff92dc on BC2-cluster at Fri Aug 29 21:45:34 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>7222e053e08bdbaac8b3dc6820ff92dc
****************************************************************************************
>2pk9B Evalue:1E-28 SeqID:23.684 Method:HHSEARCH Type:MODEL
-------*********----*-***********************************-------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2pk9B          21             172            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 7222e053e08bdbaac8b3dc6820ff92dc on gopt-65.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:47:34 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.