SWISS-MODEL Repository - Model Details

Model Overview
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1
254

Sequence
UniProt Q0JR25 Bowman-Birk type bran trypsin inhibitor (OSE727A)
Oryza sativa subsp. japonica (Rice).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
Bowman-Birk_leg
Bowman-Birk_leg
Bowman-Birk_leg
Bowman-Birk_leg

Model 3D Structure
Model information:
Modelled residue range: 46 to 186
Based on template: [ 1c2a ]  
Sequence Identity [%]: 33%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    46       KPWDCCD NIEISRLMIY PPLYRCNDEV KQCAAACKEC VEAPGGDFNG
1c2aA     4     k--rpwkccd eav--ctrsi ppictcmdev fecpktcksc gpsmgd---p
                                                                      
TARGET                     sssss       ssssss            ss sss       
1c2aA                      sss  ss     ssssss            ss sss       


TARGET    93    GAFVCSDWFS TVDPGPKCTA ALDGLSMERP WKCCDNIKRL PTKPDPPQWR
1c2aA     47    srricqdqyv g-dpgpic-- --------rp weccdka--i ctrsnpptcr
                                                                      
TARGET           sssss  ss s                              s ss     sss
1c2aA            sssss  ss s                          ss  s ss    ssss


TARGET    143   CNDELEPSQC TAACKSCREA PGPFPGKLIC EDIYWGADPG PFCT      
1c2aA     84    cvdev--kkc aptcktclps r-srpsrrvc idsy-fgpvp prct-     
                                                                      
TARGET                          sssss       ssss s                    
1c2aA           ss              sssss       ssss s  s ss              



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: 9988ed784c785ea88131bd02a2ddbf04 on BC2-cluster at Sat Aug 30 16:14:17 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>9988ed784c785ea88131bd02a2ddbf04
*************************************************************************************
>2qn5B Evalue:1.72811e-41 SeqID:83.969 Method:BLAST Type:MODEL
---------------------------------------************-*----*************-******-*****--
>1c2aA Evalue:2E-39 SeqID:33.333 Method:HHSEARCH Type:MODEL
---------------***-**********-*******---***-*****-************-----------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2qn5B          119            249            BLAST          NOT BUILT      
1c2aA          46             186            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 9988ed784c785ea88131bd02a2ddbf04 on gopt-68.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 16:16:21 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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