SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
563

Sequence
UniProt Q0V8B6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Peptidase_S8
Pro-kuma_activ

Model 3D Structure
Model information:
Modelled residue range: 198 to 561
Based on template: [ 1gt9 ]  
Sequence Identity [%]: 28%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    198        LGVTP SVIRKRYNLT AQDVGSGTTN NSQACAQFLE --QYFHDSDL
1gt91     1     aap--taytp ldvaqayqfp egldgqgqc- -----iaiie lgggydetsl
                                                                      
TARGET                     hhhhhhh           sss  ssss hhhh   hhhh   h
1gt91                sss   hhhhhhh           ss       sssss        hhh


TARGET    241   AEFMRLFGGD FAHQASVARV V---GQQGRG RAG-IEASLD VEYL--MSAG
1gt91     43    aqyfaslgvs apqvvsvsvd gatnqptgdp ngpdgeveld ievagalapg
                                                                      
TARGET          hhhhhhh        sssss           h h    hhhhh hhh       
1gt91           hhhhhhh      sssssss                hhhhhhh hhhhhhh   


TARGET    285   ANISTWVYSS PGRHESQEPF LQWLLLLSNE SALPYVHTVS YGDDEDSLSS
1gt91     93    akia--vyfa pntdagflna ittavhd--p thkpsivsis wggpedswap
                                                                      
TARGET           sss  ssss    hhhhhhh hhhhh          sssss    sss    h
1gt91            sss  ssss    hhhhhhh hhhhhh         sssss    sss    h


TARGET    335   TYIQRVNTEL MKAAARGLTL LFASGDSGAG CWSVSGRHQF RPSFPASSPY
1gt91     139   asiaamnraf ldaaalgvtv laaagdsgst d--geqdgly hvdfpaaspy
                                                                      
TARGET          hhhhhhhhhh hhhhhh  ss sssssss                sss      
1gt91           hhhhhhhhhh hhhhhh  ss sssssss                sss      


TARGET    385   VTTVGGTSFQ -------NPF RVTDEVVDYI SGGGFSNVFP RPSYQEEAVT
1gt91     187   vlacggtrlv asagrieret vwndgpdggs tgggvsrifp lpswqeranv
                                                                      
TARGET           sssssss            s sssss  sss ss sss               
1gt91            sssssssss ss  ssssss sssss  sss ss sss          hh   


TARGET    428   RYLSSSPHLP PSSYFNASGR AYPDVAALSD ---GYWVVSN HVPIPWVSGT
1gt91     237   pps------- -anpgagsgr gvpdvagnad patgyevvid gett-viggt
                                                                      
TARGET                              s ss  sssss        sss   sss      
1gt91                               s ss  sssss   ssssssss   sss ss   


TARGET    475   SASTPVFGGL LSLINEHRIL RGLPPLGFLN PRLYQKHGAG LFDVTRGCHE
1gt91     278   savaplfaal varinqkl-- --gkpvgyln ptlyqlppev fhditegnnd
                                                                      
TARGET          hhhhhhhhhh hhhhhhh             h hhh      s ss    sss 
1gt91           hhhhhhhhhh hhhhhhhh            h hhh      s ss    sss 


TARGET    525   SCLNEEVEGQ GFCSGPGWDP VTGWGTPNFP ALLKTLM              
1gt91     324   ianr----ar iyqagpgwdp ctglgspigi rllqallp             
                                                                      
TARGET                      sss            ssshh hhhhhh               
1gt91                       sss            ssshh hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b525b1dcf80fb1e8562a6a3249ab093e on BC2-cluster at Mon Sep  1 02:38:52 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>b525b1dcf80fb1e8562a6a3249ab093e
*********************************************************************************
>1gt91 Evalue:9.7E-42 SeqID:28.721 Method:HHSEARCH Type:MODEL
----------------------------*********************************--*******-****-****-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1gt91          198            561            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b525b1dcf80fb1e8562a6a3249ab093e on gopt-55.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 02:44:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.