SWISS-MODEL Repository - Model Details

Model Overview
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1
147

Sequence
UniProt Q10129
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q10129: 6239.F56D1.3.1

Domain
Link to: [ InterPro ]
Ribosomal_S16

Model 3D Structure
Model information:
Modelled residue range: 13 to 94
Based on template: [ 1vs7 ]  
Sequence Identity [%]: 32%
Model date: 2013-02-21
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (1vs7): HETERO 11-mer
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1      PSIGLALFG CTNRPFYHVC VFPDRALGRR YEGNILEQVG TFDPLPNQKN
1vs7P     1     mvtirlarhg akkrpfyqvv vadsr---na rngrfiervg ffnpiase-k
                                                                      
TARGET            sssssss       sssss sssss  sss       ssss ss        
1vs7P             sssssss       sssss ss               ssss ss        


TARGET    50    EKLVALNFGR LKYWIGERNA HISVPVLELL GLS -                
1vs7P     47    eegtrldldr iahwvg-qga tisdrvaali kevnk                
                                                                      
TARGET                                   hhh   h hhh                  
1vs7P                          hh h      hhh   h hh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 1vs7 is annotated as HETERO 11-mer 
 PISA was used to annotate the quaternary structure, because the author assignment was not complete  
  The template was built based on the following PISA annotation file: 1vs7_assembly.xml.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 1vs7_1

Template Selection 
 - Start SMR-Pipeline for:1f30b4edae7b9bb65c1fbd03e978d427 on BC2-cluster at Wed Feb 20 23:59:33
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with M found
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 - No template with Q found
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 - No template with G found
 - No template with I found
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 - No template with K found
 - No template with J found
 - No template with M found
 - No template with L found
 - No template with N found
 - No template with Q found
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 - No template with H found
 - No template with C found
 - No template with J found
 - No template with G found
 - No template with K found
 - No template with M found
 - No template with L found
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 - No template with N found
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 - No template with G found
 - No template with C found
 - No template with D found
 - No template with I found
 - No template with K found
 - No template with M found
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 - No template with Q found
 - No template with T found
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 - No template with J found
 - No template with I found
 - No template with H found
 - No template with K found
 - No template with M found
 - No template with L found
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 - No template with N found
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 - No template with K found
 - No template with J found
 - No template with M found
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 - No template with O found
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 - No template with M found
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 - No template with M found
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 - No template with E found
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 - No template with M found
 - No template with L found
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 - No template with E found
 - No template with D found
 - No template with I found
 - No template with H found
 - No template with K found
 - No template with M found
 - No template with N found
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 - No template with T found
 - No template with G found
 - No template with D found
 - No template with I found
 - No template with M found
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 - No template with J found
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 - No template with Q found
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 - No template with H found
 - No template with C found
 - No template with E found
 - No template with I found
 - No template with K found
 - No template with M found
 - No template with L found
 - No template with O found
 - No template with N found
 - No template with Q found
 - No template with T found
 - No template with C found
 - No template with E found
 - No template with I found
 - No template with H found
 - No template with K found
 - No template with M found
 - No template with O found
 - No template with N found
 - No template with Q found
 - No template with T found
 - No template with C found
 - No template with E found
 - No template with D found
 - No template with I found
 - No template with K found
 - No template with M found
 - No template with L found
 - No template with N found
 - No template with Q found
 - No template with T found
 - No template with C found
 - No template with E found
 - No template with D found
 - No template with I found
 - No template with K found
 - No template with M found
 - No template with L found
 - No template with N found
 - No template with Q found
 - No template with T found
 - No template with C found
 - No template with G found
 - No template with I found
 - No template with K found
 - No template with J found
 - No template with M found
 - No template with O found
 - No template with N found
 - No template with Q found
 - No template with T found
 - No template with B found
 - No template with G found
 - No template with I found
 - No template with H found
 - No template with K found
 - No template with M found
 - No template with N found
 - No template with Q found
 - No template with S found
 - No template with R found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -        *********************************************
 - building model based on 1vs7P (13-94) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:1f30b4edae7b9bb65c1fbd03e978d427 on BC2-cluster at Thu Feb 21 00:00:56
2013


Template Description
Match Chain SeqId

1vs7: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIAT 3.5A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OFONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 1vs7P 33%
[Model]

3df3: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITHHYGROMYCIN B BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINSTWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3df3P 33%
[Model]

2wwl: E.COLI 70S RIBOSOME STALLED DURING TRANSLATION OF TNAC LEADER PEPTIDE. THIS FILE CONTAINS THE 30S, THE P-SITE TRNA AND THE TNAC LEADER PEPTIDE (PART 1 OF 2).
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2wwlP 33%
[Model]

2qbj: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIOF THE SECOND 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IDESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qbjP 33%
[Model]

2gy9: STRUCTURE OF THE 30S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-93 2gy9P 33%
[Model]

3ora: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3oraP 33%
[Model]

2qbf: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTO(RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qbfP 33%
[Model]

2aw7: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2aw7P 33%
[Model]

3ofb: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMTHIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBO
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3ofbP 33%
[Model]

2qp0: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECON70S RIBOSOME, WITH SPECTINOMYCIN AND NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qp0P 33%
[Model]

2gyb: STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNAND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-93 2gybP 33%
[Model]

3ofy: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMFILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3ofyP 33%
[Model]

3i1s: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3i1sP 33%
[Model]

3ofp: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROFILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3ofpP 33%
[Model]

3oar: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHRFILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3oarP 33%
[Model]

2i2u: CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS TH30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2i2uP 33%
[Model]

3i21: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3i21P 33%
[Model]

2z4m: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOMERECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIOF THE SECOND 70S RIBOSOME, WITH PAROMOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IDESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2z4mP 33%
[Model]

2vhp: STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOM(PART 4 OF 4)
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2vhpP 33%
[Model]

2qbb: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITHGENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qbbP 33%
[Model]

2qan: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITHNEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qanP 33%
[Model]

2qow: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILECONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITHSPECTINOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINTWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 2qowP 33%
[Model]

3fih: TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME. THIS ENTRY CONSISTS OF THE 30S SUBUNIT, TRNAS AND THE TERNARY COMPLE
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3fihP 33%
[Model]

3i1o: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 6.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-94 3i1oP 33%
[Model]

4gd2: STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRTRNA BINDING
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4gd2P 32%
[Model]

4adv: STRUCTURE OF THE E. COLI METHYLTRANSFERASE KSGA BOUND TO T30S RIBOSOMAL SUBUNIT
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4advP 32%
[Model]

2qbh: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIOF THE FIRST 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IDESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qbhP 32%
[Model]

3or9: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3or9P 32%
[Model]

2qou: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILECONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH SPECTINOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINTWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qouP 32%
[Model]

3ofx: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMFILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3ofxP 32%
[Model]

3j0x: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS 4B OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j0xS 32%
[Model]

2vho: STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOM(PART 3 OF 4)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2vhoP 32%
[Model]

2ykr: 30S RIBOSOMAL SUBUNIT WITH RSGA BOUND IN THE PRESENCE OF G
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2ykrP 32%
[Model]

2qal: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qalP 32%
[Model]

3i1m: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3i1mP 32%
[Model]

4a2i: CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN CTHE YJEQ BIOGENESIS FACTOR
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4a2iP 32%
[Model]

2z4k: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOMERECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIOF THE FIRST 70S RIBOSOME, WITH PAROMOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IDESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2z4kP 32%
[Model]

2qoy: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST70S RIBOSOME, WITH SPECTINOMYCIN AND NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qoyP 32%
[Model]

4gaq: ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIB
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4gaqP 32%
[Model]

3i1q: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3i1qP 32%
[Model]

3sfs: CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTPROTATED CONFORMATION OF THE RIBOSOME
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3sfsP 32%
[Model]

3j10: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS 6 OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j10S 32%
[Model]

3j00: STRUCTURE OF THE RIBOSOME-SECYE COMPLEX IN THE MEMBRANE EN
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j00P 32%
[Model]

3e1c: STRUCTURE OF THE 30S SUBUNIT AND THE TRNAS OF E. COLI RIBOSOME IN POST-ACCOMMODATION STATE
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3e1cI 32%
[Model]

3j0z: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS 5 OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j0zS 32%
[Model]

1vs5: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIAT 3.5A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OFONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 1vs5P 32%
[Model]

3j13: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS 3 OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j13R 32%
[Model]

3oaq: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHRFILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3oaqP 32%
[Model]

3ofo: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROFILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3ofoP 32%
[Model]

4gas: ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIB
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4gasP 32%
[Model]

2avy: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2avyP 32%
[Model]

4gd1: STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRTRNA BINDING
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 4gd1P 32%
[Model]

3uoq: CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTPROTATED CONFORMATION OF THE RIBOSOME (WITHOUT VIOMYCIN)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3uoqP 32%
[Model]

2qbd: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTO(RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qbdP 32%
[Model]

3j0v: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS 4A OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j0vS 32%
[Model]

3df1: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH HYGROMYCIN B BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINSTWO 70S RIBOSOMES.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3df1P 32%
[Model]

3j18: STRUCTURE OF THE BACTERIAL RIBOSOME COMPLEXED BY TMRNA-SMPDURING TRANSLOCATION AND MLD-LOADING (30S SUBUNIT)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j18P 32%
[Model]

2i2p: CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS TH30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2i2pP 32%
[Model]

3i1z: CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3i1zP 32%
[Model]

3ofa: CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMTHIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOS
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3ofaP 32%
[Model]

2qb9: CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 2qb9P 32%
[Model]

3j0u: STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INT(30S RIBOSOME OF CLASS2 OF THE SIX CLASSES)
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3j0uS 32%
[Model]

3e1a: STRUCTURE OF THE 30S SUBUNIT AND THE TRNAS OF E. COLI RIBOSOME IN PRE-ACCOMMODATION STATE
Solved by: X-RAY, Resolution: 16.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

13-97 3e1aI 32%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.