SWISS-MODEL Repository - Model Details

Model Overview
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1
186

Sequence
UniProt Q10LI6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Pept_tRNA_hydro

Model 3D Structure
Model information:
Modelled residue range: 60 to 172
Based on template: [ 1ryb ]  
Sequence Identity [%]: 60%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    60      PWLFVGLG NPGEKYQCTR HNVGFDMIDM FAQSQGISLT RHPFKALFGE
1rybA     1     ytpwliaglg npgnkyygtr hnvgfemvdr iaaeegitmn tiqsksllgi
                                                                      
TARGET             ssssss                hhhhhhh hhhhh      sss ssssss
1rybA              ssssss                hhhhhhh hhhhh      sss ssssss


TARGET    108   GMVEGVPVLL AKPQTYMNLS GESVGPLAAY YKLPLNRVLV AFDDMDLPCG
1rybA     51    gsigevpvlv vkpqsymnys geaigplaay yqvplrhill iyddtslpng
                                                                      
TARGET          sss  sssss ssss       hhhhhhhhhh h     ssss s         
1rybA           sss  sssss ssss       hhhhhhhhhh h     ssss ssss      


TARGET    158   VLRLQPKGGY GRHNG ---- ---------- ---------- ----------
1rybA     101   vlrlqkkggh grhnglqnvi ehldgrrefp rlsigigspp gkmdprafll
                                                                      
TARGET                                                                
1rybA           sssss         hhhhhhh hh       s ssssss         hhhhh 


TARGET          ---------- ---------- ---------- ------               
1rybA     151   qkfsseervq idtaleqgvd avrtlvlkge rfnlvq               
                                                                      
TARGET                                                                
1rybA               hhhhhh hhhhhhhhhh hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e892b60f3d6d7461453bc3b0b350b326 on BC2-cluster at Fri Aug 29 22:33:41 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>e892b60f3d6d7461453bc3b0b350b326
*********************************************************************************************
>1rybA Evalue:3.39566e-38 SeqID:60.177 Method:BLAST Type:MODEL
-----------------------------*********************************************************-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1rybA          60             172            BLAST          BUILT          

FINISHED PIPELINE ON ID: e892b60f3d6d7461453bc3b0b350b326 on gopt-74.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 22:35:08 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.