SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] |
Alignment
TARGET 1 KTVKEWS LDDVLLWLQS AQMDDVAGLL IGYDLRGEDL LQWNDQTLAQ
2gleA 1 g--hmvhews vqqvshwlvg lsldqyvsef saqnisgeql lqldgnklka
TARGET hhhhhhh hhhhhh hh hhhh hhhhhh
2gleA hhhhhhh hhhhhh hhh hhhh hhhhhhh
TARGET 48 LGVSNPEIRK KLLDDLSKII EN ---
2gleA 49 lgmtssqdra lvkkklkemk msleka
TARGET hhhhh hhhhhh h hh
2gleA hhhhh hhhhhh h hhhhh
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
2gle is annotated as MONOMER
The template structure (2gle) was solved by NMR and does not contain any quaternary structure annotation
The template is annotated by the number of chains found in the PDB file
Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 26.087) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode
The target structure was calculated as SINGLE CHAIN
Template Selection
- Start SMR-Pipeline for:9cbe302d371d61b5bd50e49e6b5c7412 on BC2-cluster at Mon May 6 15:16:38
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modified template library
- Summarize templates:
- No template with C found
- No template with D found
- Warning: Oligomer Prediction was not successfull!
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *********
- building model based on 2gleA (397-465) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:9cbe302d371d61b5bd50e49e6b5c7412 on BC2-cluster at Mon May 6 15:53:20
2013
Template Search
| Template Description |
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2gle: SOLUTION STRUCTURE OF NEURABIN SAM DOMAIN Solved by: NMR, Identified by HHSEARCH |
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3bs7: CRYSTAL STRUCTURE OF THE STERILE ALPHA MOTIF (SAM) DOMAIN OF HYPHEN/AVEUGLE Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH |
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2l5y: NMR STRUCTURE OF CALCIUM-LOADED STIM2 EF-SAM. Solved by: NMR, Identified by HHSEARCH |
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2f3n: CRYSTAL STRUCTURE OF THE NATIVE SHANK SAM DOMAIN. Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH |
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3bq7: SAM DOMAIN OF DIACYLGLYCEROL KINASE DELTA1 (E35G) Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH |
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2k60: NMR STRUCTURE OF CALCIUM-LOADED STIM1 EF-SAM Solved by: NMR, Identified by HHSEARCH |
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2f44: CRYSTAL STRUCTURE OF THE ZINC-BOUND SHANK SAM DOMAIN Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH |
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2e8o: SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF THE SAMDOMAIN AND HD DOMAIN CONTAINING PROTEIN 1 (DENDRITIC CELLDERIVED IFNG-INDUCED PROTEIN) (DCIP) (MONOCYTE PROTEIN 5)(MOP-5) Solved by: NMR, Identified by HHSEARCH |
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1wwv: SOLUTION STRUCTURE OF THE SAM DOMAIN OF HUMAN CONNECTOR ENHANCER OF KSR-LIKE PROTEIN CNK1 Solved by: NMR, Identified by HHSEARCH |
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3bs5: CRYSTAL STRUCTURE OF HCNK2-SAM/DHYP-SAM COMPLEX Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH |
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2ean: SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF HUMAN KIAA0902 PROTEIN (CONNECTOR ENHANCER OF KINASE SUPPRESSOROF RAS 2) Solved by: NMR, Identified by HHSEARCH |
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3tad: CRYSTAL STRUCTURE OF THE LIPRIN-ALPHA/LIPRIN-BETA COMPLEX Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH |
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1v85: STERILE ALPHA MOTIF (SAM) DOMAIN OF MOUSE BIFUNCTIONAL APOPTOSIS REGULATOR Solved by: NMR, Identified by HHSEARCH |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.