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Model Overview
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1
832

Sequence
UniProt Q12028
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q12028: 4932.YPR029C

Domain
Link to: [ InterPro ]
Adaptin_N
Alpha_adaptinC2

Model 3D Structure
Model information:
Modelled residue range: 343 to 403
Based on template: [ 1u6g ]  
Sequence Identity [%]: 25%
Model date: 2013-05-04
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (1u6g): HETERO TRIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

                                                       
1u6gC     4     asyhisnlle kmtssdkdfr fmatndlmte lqkdsikldd dserkvvkmi
                                                                      
                                                       
1u6gC              hhhhhhh h     hhhh hhhhhhhhhh             hhhhhhhhh


                                                       
1u6gC     54    lklledknge vqnlavkclg plvskvkeyq vetivdtlct nmlsdkeqlr
                                                                      
                                                       
1u6gC           hhh     hh hhhhhhhhhh hh     hhh hhhhhhhhhh hh     hhh


                                                       
1u6gC     104   dissiglktv igelpsalaa nvckkitgrl tsaiakqedv svqlealdim
                                                                      
                                                       
1u6gC           hhhhhhhhhh hh         hhhhhhhhhh hhhh        hhhhhhhhh


                                                       
1u6gC     159   admlsrqggl lvnfhpsilt cllpqltspr lavrkrtiia lghlvmscfv
                                                                      
                                                       
1u6gC           hhhhhh         hhhhh    hhhh      hhhhhhhhh hhhhh    h


                                                       
1u6gC     209   dliehllsel skndsmsttr tyiqciaais rqaghrigey lekiiplvvk
                                                                      
                                                       
1u6gC           hhhhhhhhhh hh          hhhhhhhhh hhh            hhhhhh


                                                       
1u6gC     259   fcnvdddelr eyciqafesf vrrcpkevyp hvstiinicl kyltydmswk
                                                                      
                                                       
1u6gC           hh       h hhhhhhhhh           h hhhhhhhhh           h


                                                       
1u6gC     349   vrraaakcld avvstrheml pefyktvspa lisrfkeree nvkadvfhay
                                                                      
                                                       
1u6gC           hhhhhhhhhh hhh      h hhhh                  hhhhhhhhhh


TARGET    1                                      LAKFLAGKDN NTKYVSLNTL
1u6gC     399   lsllkqtrpv getpltmlqs qvpnivka-- lhkqmkeksv ktrqccfnml
                                                                      
TARGET                                            hhh       hhhhhhhhhh
1u6gC           hhhhhhh       hhhhhhh    hhhhh   hhhh       hhhhhhhhhh


TARGET    21    LKVVPQEPTA VQRHRKFIS- ---HCLQDT- -DVSIRMRAL ELSFAIL --
1u6gC     459   telvnvlpga ltqhipvlvp giifslndks sssnlkidal sclyvilcnh
                                                                      
TARGET          hhhhhh     hh   hhh                 hhhhhhh hhhhhhh   
1u6gC           hhhhhh     hh   hhhhh hhhhh         hhhhhhh hhhhhhh   


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     509   spqvfhphvq alvppvvacv gdpfykitse allvtqqlvk virpldqpss
                                                                      
TARGET                                                                
1u6gC             hhhhhhh    hhhhhhh       hhhhh hhhhhhhhhh hh        


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     559   fdatpyikdl ftctikrlka adidqevker aiscmgqiic nlgdnlgsdl
                                                                      
TARGET                                                                
1u6gC                 hhhh hhhhhhhh       hhhhhh hhhhhhhhhh           


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     609   pntlqifler lkneitrltt vkaltliags plkidlrpvl gegvpilasf
                                                                      
TARGET                                                                
1u6gC           hhhhhhhhhh       hhhh hhhhhh           hhhh hhhhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     659   lrknqralkl gtlsaldili knysdsltaa midavldelp plisesdmhv
                                                                      
TARGET                                                                
1u6gC                 hhhh hhhhhhhhhh hh       h h   hh   h hh     hhh


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     709   sqmaisfltt lakvypssls kisgsilnel iglvrspllq ggalsamldf
                                                                      
TARGET                                                                
1u6gC           hhhhhhhhhh hhh     hh          h hhh          hhhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     759   fqalvvtgtn nlgymdllrm ltgpvysqth kqsyysiakc vaaltracpk
                                                                      
TARGET                                                                
1u6gC           h   hh         hhhhhh hh          hhhhhhhhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     813   egpavvgqfi qdvknsrstd sirllallsl gevghhidls gqlelksvil
                                                                      
TARGET                                                                
1u6gC             hhhh                hhhhhhhhhh hhhhhh        hhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     863   eafsspseev ksaasyalgs isvgnlpeyl pfvlqeitsq pkrqylllhs
                                                                      
TARGET                                                                
1u6gC           hh     hhh hhhhhhhhhh hhh      h hhhhhhhh      hhhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     913   lkeiissasv vglkpyveni walllkhcec aeegtrnvva eclgkltlid
                                                                      
TARGET                                                                
1u6gC           hhhhh       hhhhhhhhh hhhhhh       hhhhhhhh hhhhhhh   


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     963   petllprlkg ylisgssyar ssvvtavkft isdhpqpidp llkncigdfl
                                                                      
TARGET                                                                
1u6gC               hhhh         hhhh hhhhhhhh          hhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     1013  ktledpdlnv rrvalvtfns aahnkpslir dlldtvlphl ynetkvrkel
                                                                      
TARGET                                                                
1u6gC                    h hhhhhhhhhh hh       h hhhhhhhhhh hhh      s


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     1063  irevemgpfk htvddgldir kaafecmytl ldscldrldi feflnhvedg
                                                                      
TARGET                                                                
1u6gC           ssssss  ss ssssshhhhh hhhhhhhhhh h          hhhhhhhhh 


TARGET          ---------- ---------- ---------- ---------- ----------
1u6gC     1113  lkdhydikml tflmlvrlst lcpsavlqrl drlveplrat cttkvkansv
                                                                      
TARGET                                                                
1u6gC               hhhhhh hhhhhhhhhh       h    hhhhhhhhh            


TARGET          ---------- ---------- ---------- ---------- --------  
1u6gC     1163  kqefekqdel krsamravaa lltipeaeks plmsefqsqi ssnpelaa  
                                                                      
TARGET                                                                
1u6gC            hhhhhhhhh    hhhhh           hh        hhh hh   h

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 1u6g is annotated as HETERO TRIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1u6g.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 1u6g_1

Template Selection 
 - Start SMR-Pipeline for:f73ddef9f8622d6d7a06a7955bb775b8 on BC2-cluster at Sat May  4 20:47:21
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
FATAL - No md5 found in hash for: 4jlqA
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
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 - No template with D found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
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 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with U found
 - No template with M found
 - No template with S found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with F found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with F found
 - No template with P found
 - No template with P found
 - No template with E found
 - No template with D found
 - No template with F found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with P found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with U found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with E found
 - No template with I found
 - No template with U found
 - No template with B found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with I found
 - No template with L found
 - No template with U found
 - No template with A found
 - No template with M found
 - No template with S found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with B found
 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 - ************************************************************
 - building model based on 1w63K (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 1w63G (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 1w63C (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 1w63I (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 1w63E (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 1w63A (5-633) was not successful go to next best template
 - ************************************************************
 - building model based on 4hmyA (5-629) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63K (4-633) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63G (4-633) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63C (4-633) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63I (4-633) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63E (4-633) was not successful go to next best template
 - *************************************************************
 - building model based on 1w63A (4-633) was not successful go to next best template
 - ************************************************************
 - building model based on 4hmyA (5-629) was not successful go to next best template
 - ************************************************************
 - building model based on 2jkrL (5-631) was successful 
 -                                  ******
 - building model based on 1u6gC (343-403) was successful 
 -                                                                      ***********
 - building model based on 3zy7A (722-832) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:f73ddef9f8622d6d7a06a7955bb775b8 on BC2-cluster at Sat May  4 21:14:03
2013


Template Description
Match Chain SeqId

3nd2: STRUCTURE OF YEAST IMPORTIN-BETA (KAP95P)
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

100-169 3nd2A 6%
[Model]
97-443 3nd2A 9%
[Model]
114-208 3nd2A 9%
[Model]
321-459 3nd2A 7%
[Model]
70-402 3nd2A 8%
[Model]
151-167 3nd2A 24%
[Model]

3zy7: CRYSTAL STRUCTURE OF COMPUTATIONALLY REDESIGNED GAMMA- ADAPTIN APPENDAGE DOMAIN FORMING A SYMMETRIC HOMODIMER
Solved by: X-RAY, Resolution: 1.09A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-832 3zy7B 19%
[Model]
722-832 3zy7A 19%
[Model]

2dwy: CRYSTAL STRUCTURE ANALYSIS OF GGA1-GAE
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-830 2dwyA 19%
[Model]
722-830 2dwyB 19%
[Model]
720-831 2dwyC 18%
[Model]
722-830 2dwyD 19%
[Model]

1om9: STRUCTURE OF THE GGA1-APPENDAGE IN COMPLEX WITH THE P56 BINDING PEPTIDE
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

717-831 1om9A 18%
[Model]
717-831 1om9B 18%
[Model]

1na8: CRYSTAL STRUCTURE OF ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

718-830 1na8A 18%
[Model]
717-831 1na8B 18%
[Model]

1gyu: GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1
Solved by: X-RAY, Resolution: 1.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-832 1gyuA 18%
[Model]

2a7b: ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULAR CRYSTALLOGRAPHY, PART III- THE OPTIMAL DATA COLLECTION WAVELENGTH
Solved by: X-RAY, Resolution: 1.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-832 2a7bA 18%
[Model]

1v18: THE CRYSTAL STRUCTURE OF BETA-CATENIN ARMADILLO REPEAT COMPLEXED WITH A PHOSPHORYLATED APC 20MER REPEAT.
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-210 1v18A 17%
[Model]

1iu1: CRYSTAL STRUCTURE OF HUMAN GAMMA1-ADAPTIN EAR DOMAIN
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

721-832 1iu1A 17%
[Model]
719-832 1iu1B 17%
[Model]

1gyv: GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1, L762E MUTANT
Solved by: X-RAY, Resolution: 1.71A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-832 1gyvA 17%
[Model]

1m5n: CRYSTAL STRUCTURE OF HEAT REPEATS (1-11) OF IMPORTIN B BOUND TO THE NON-CLASSICAL NLS(67-94) OF PTHRP
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

335-614 1m5nS 6%
[Model]
514-576 1m5nS 17%
[Model]

3mnm: CRYSTAL STRUCTURE OF GAE DOMAIN OF GGA2P FROM SACCHAROMYCE
Solved by: X-RAY, Resolution: 1.73A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

724-830 3mnmA 16%
[Model]
724-830 3mnmB 16%
[Model]
724-830 3mnmC 17%
[Model]

2bpt: STRUCTURE OF THE NUP1P:KAP95P COMPLEX
Solved by: X-RAY, Resolution: 1.99A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

113-402 2bptA 8%
[Model]
97-480 2bptA 9%
[Model]
132-168 2bptA 16%
[Model]
320-460 2bptA 8%
[Model]
70-529 2bptA 6%
[Model]
561-577 2bptA 6%
[Model]

2e9g: SOLUTION STRUCTURE OF THE ALPHA ADAPTINC2 DOMAIN FROM HUMAADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 2 SUBUNIT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

719-832 2e9gA 16%
[Model]

1gyw: GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1 A753D MUTANT
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

717-832 1gywA 16%
[Model]
717-832 1gywB 16%
[Model]

1th1: BETA-CATENIN IN COMPLEX WITH A PHOSPHORYLATED APC 20AA REPEAT FRAGMENT
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

99-211 1th1A 15%
[Model]
98-613 1th1B 10%
[Model]

3uky: MOUSE IMPORTIN ALPHA: YEAST CBP80 CNLS COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 3ukyB 15%
[Model]
589-612 3ukyB 13%
[Model]

1i7w: BETA-CATENIN/PHOSPHORYLATED E-CADHERIN COMPLEX
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-440 1i7wA 12%
[Model]
96-210 1i7wC 15%
[Model]

2dwx: CO-CRYSTAL STRUCTURE ANALYSIS OF GGA1-GAE WITH THE WNSF MOTIF
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

722-830 2dwxA 19%
[Model]
722-831 2dwxB 15%
[Model]
722-830 2dwxC 19%
[Model]
722-830 2dwxD 19%
[Model]

1luj: CRYSTAL STRUCTURE OF THE BETA-CATENIN/ICAT COMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

104-208 1lujA 15%
[Model]

3l3q: MOUSE IMPORTIN ALPHA-PEPTM NLS PEPTIDE COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 3l3qA 15%
[Model]
589-612 3l3qA 13%
[Model]

3ukz: MOUSE IMPORTIN ALPHA: MOUSE CBP80 CNLS COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 3ukzB 15%
[Model]
589-612 3ukzB 13%
[Model]

3oqs: CRYSTAL STRUCTURE OF IMPORTIN-ALPHA BOUND TO A CLIC4 NLS P
Solved by: X-RAY, Resolution: 2.38A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

340-440 3oqsA 14%
[Model]
338-439 3oqsA 12%
[Model]
379-611 3oqsA 15%
[Model]

1jpw: CRYSTAL STRUCTURE OF A HUMAN TCF-4 / BETA-CATENIN COMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

104-210 1jpwA 15%
[Model]
104-210 1jpwB 15%
[Model]
104-210 1jpwC 15%
[Model]

2ynr: MIMP_ALPHADIBB_B54NLS
Solved by: X-RAY, Resolution: 2.38A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

340-440 2ynrA 14%
[Model]
338-439 2ynrA 12%
[Model]
379-611 2ynrA 15%
[Model]

3rzx: MOUSE IMPORTIN ALPHA-KU70 NLS PEPTIDE COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 3rzxA 15%
[Model]
589-612 3rzxA 13%
[Model]

3lww: STRUCTURE OF AN OPEN AND CLOSED CONFORMATION OF HUMAN IMPOBOUND TO THE SNURPORTIN1 IBB-DOMAIN TRAPPED IN THE SAME CRYSTALLOGRAPHIC ASYMMETRIC UNIT
Solved by: X-RAY, Resolution: 3.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

105-168 3lwwA 10%
[Model]
136-168 3lwwA 18%
[Model]
71-210 3lwwA 9%
[Model]
70-209 3lwwA 7%
[Model]
72-207 3lwwA 15%
[Model]
131-208 3lwwC 13%
[Model]
70-524 3lwwC 8%
[Model]
64-211 3lwwC 9%
[Model]
76-207 3lwwC 14%
[Model]

3rz9: MOUSE IMPORTIN ALPHA-KU80 NLS PEPTIDE COMPLEX
Solved by: X-RAY, Resolution: 2.38A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

340-440 3rz9A 14%
[Model]
338-439 3rz9A 12%
[Model]
379-611 3rz9A 15%
[Model]

2c1t: STRUCTURE OF THE KAP60P:NUP2 COMPLEX
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

338-439 2c1tA 18%
[Model]
342-483 2c1tA 12%
[Model]
380-439 2c1tA 15%
[Model]
71-399 2c1tA 11%
[Model]
69-440 2c1tA 9%
[Model]
338-439 2c1tB 18%
[Model]
342-483 2c1tB 12%
[Model]
380-439 2c1tB 15%
[Model]
71-399 2c1tB 11%
[Model]
69-440 2c1tB 9%
[Model]

1jpp: THE STRUCTURE OF A BETA-CATENIN BINDING REPEAT FROM ADENOMATOUS POLYPOSIS COLI (APC) IN COMPLEX WITH BETA- CATENIN
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

105-211 1jppA 15%
[Model]
103-611 1jppB 10%
[Model]

1pjm: MOUSE IMPORTIN ALPHA-BIPARTITE NLS FROM HUMAN RETINOBLASTOMA PROTEIN COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 1pjmB 15%
[Model]
589-612 1pjmB 13%
[Model]

3uvu: STRUCTURAL BASIS OF NUCLEAR IMPORT OF FLAP ENDONUCLEASE 1
Solved by: X-RAY, Resolution: 2.38A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

340-440 3uvuA 14%
[Model]
338-439 3uvuA 12%
[Model]
379-611 3uvuA 15%
[Model]

4htv: MOUSE IMPORTIN ALPHA: BFDV CAP NLS PEPTIDE COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

343-440 4htvA 15%
[Model]
589-612 4htvA 13%
[Model]

1qgk: STRUCTURE OF IMPORTIN BETA BOUND TO THE IBB DOMAIN OF IMPORTIN ALPHA
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-211 1qgkA 9%
[Model]
70-209 1qgkA 7%
[Model]
72-208 1qgkA 15%
[Model]
562-577 1qgkA 13%
[Model]

2p8q: CRYSTAL STRUCTURE OF HUMAN IMPORTIN BETA BOUND TO THE SNURPORTIN1 IBB-DOMAIN
Solved by: X-RAY, Resolution: 3.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

105-168 2p8qA 10%
[Model]
136-168 2p8qA 18%
[Model]
71-210 2p8qA 9%
[Model]
70-209 2p8qA 7%
[Model]
72-207 2p8qA 15%
[Model]

2h4m: KARYOPHERIN BETA2/TRANSPORTIN-M9NLS
Solved by: X-RAY, Resolution: 3.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

96-441 2h4mA 10%
[Model]
98-207 2h4mB 12%
[Model]
120-207 2h4mB 11%
[Model]
122-206 2h4mA 12%
[Model]
131-477 2h4mA 8%
[Model]
131-442 2h4mB 10%
[Model]
151-206 2h4mA 14%
[Model]
16-441 2h4mA 11%
[Model]
334-460 2h4mA 13%
[Model]
71-166 2h4mB 7%
[Model]
70-167 2h4mA 6%
[Model]
70-460 2h4mB 11%
[Model]
72-442 2h4mB 10%
[Model]
70-207 2h4mB 10%
[Model]
70-207 2h4mB 11%
[Model]
71-207 2h4mA 11%
[Model]

1p4u: CRYSTAL STRUCTURE OF GGA3 GAE DOMAIN IN COMPLEX WITH RABAPTIN-5 PEPTIDE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

717-830 1p4uA 14%
[Model]

1w63: AP1 CLATHRIN ADAPTOR CORE
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

104-442 1w63B 10%
[Model]
69-608 1w63B 10%
[Model]
109-484 1w63A 8%
[Model]
104-472 1w63A 9%
[Model]
50-485 1w63B 9%
[Model]
52-482 1w63A 10%
[Model]
29-484 1w63B 9%
[Model]
140-581 1w63B 7%
[Model]
29-441 1w63B 10%
[Model]
316-614 1w63B 11%
[Model]
332-440 1w63B 9%
[Model]
58-208 1w63B 13%
[Model]
68-420 1w63A 14%
[Model]
26-634 1w63B 14%
[Model]
104-442 1w63D 10%
[Model]
69-608 1w63D 10%
[Model]
109-484 1w63C 8%
[Model]
104-472 1w63C 9%
[Model]
50-485 1w63D 9%
[Model]
52-482 1w63C 10%
[Model]
29-484 1w63D 9%
[Model]
140-581 1w63D 7%
[Model]
29-441 1w63D 10%
[Model]
316-614 1w63D 11%
[Model]
332-440 1w63D 9%
[Model]
58-208 1w63D 13%
[Model]
68-420 1w63C 14%
[Model]
26-634 1w63D 14%
[Model]
104-442 1w63F 10%
[Model]
69-608 1w63F 10%
[Model]
109-484 1w63E 8%
[Model]
104-472 1w63E 9%
[Model]
50-485 1w63F 9%
[Model]
52-482 1w63E 10%
[Model]
29-484 1w63F 9%
[Model]
140-581 1w63F 7%
[Model]
29-441 1w63F 10%
[Model]
316-614 1w63F 11%
[Model]
332-440 1w63F 9%
[Model]
58-208 1w63F 13%
[Model]
68-420 1w63E 14%
[Model]
26-634 1w63F 14%
[Model]
104-442 1w63J 10%
[Model]
69-608 1w63J 10%
[Model]
109-484 1w63I 8%
[Model]
104-472 1w63I 9%
[Model]
50-485 1w63J 9%
[Model]
52-482 1w63I 10%
[Model]
29-484 1w63J 9%
[Model]
140-581 1w63J 7%
[Model]
29-441 1w63J 10%
[Model]
316-614 1w63J 11%
[Model]
332-440 1w63J 9%
[Model]
58-208 1w63J 13%
[Model]
68-420 1w63I 14%
[Model]
26-634 1w63J 14%
[Model]
104-442 1w63L 10%
[Model]
69-608 1w63L 10%
[Model]
109-484 1w63K 8%
[Model]
104-472 1w63K 9%
[Model]
50-485 1w63L 9%
[Model]
52-482 1w63K 10%
[Model]
29-484 1w63L 9%
[Model]
140-581 1w63L 7%
[Model]
29-441 1w63L 10%
[Model]
316-614 1w63L 11%
[Model]
332-440 1w63L 9%
[Model]
58-208 1w63L 13%
[Model]
68-420 1w63K 14%
[Model]
26-634 1w63L 14%
[Model]
104-442 1w63H 10%
[Model]
69-608 1w63H 10%
[Model]
109-484 1w63G 8%
[Model]
104-472 1w63G 9%
[Model]
50-485 1w63H 9%
[Model]
52-482 1w63G 10%
[Model]
29-484 1w63H 9%
[Model]
140-581 1w63H 7%
[Model]
29-441 1w63H 10%
[Model]
316-614 1w63H 11%
[Model]
332-440 1w63H 9%
[Model]
58-208 1w63H 13%
[Model]
68-420 1w63G 14%
[Model]
26-634 1w63H 14%
[Model]
4-633 1w63K 33%
[Model]
4-633 1w63G 33%
[Model]
4-633 1w63C 33%
[Model]
4-633 1w63I 33%
[Model]
4-633 1w63E 33%
[Model]
4-633 1w63A 33%
[Model]

3tpo: CRYSTAL STRUCTURE OF D192A/E396A MUTANT OF MOUSE IMPORTIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

338-611 3tpoA 12%
[Model]
339-440 3tpoA 14%
[Model]
380-439 3tpoA 13%
[Model]
63-439 3tpoA 11%
[Model]

3b2a: CRYSTAL STRUCTURE OF THE ARCHAEAL HEAT-LIKE REPEATS PROTEIFROM THERMOCOCCUS ONNURINEUS NA1
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

179-415 3b2aA 13%
[Model]
179-415 3b2aB 13%
[Model]

1jdh: CRYSTAL STRUCTURE OF BETA-CATENIN AND HTCF-4
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-439 1jdhA 13%
[Model]

3fey: CRYSTAL STRUCTURE OF THE CBC-IMPORTIN ALPHA COMPLEX.
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

589-612 3feyC 13%
[Model]

2z5j: FREE TRANSPORTIN 1
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

111-166 2z5jA 10%
[Model]
95-410 2z5jA 11%
[Model]
96-208 2z5jA 10%
[Model]
70-207 2z5jA 10%
[Model]
70-211 2z5jA 12%
[Model]
70-212 2z5jA 13%
[Model]
73-131 2z5jA 11%
[Model]

1ee5: YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A NUCLEOPLASMIN NLS PEPTIDE
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

338-612 1ee5A 12%
[Model]
69-440 1ee5A 8%
[Model]

2xa7: AP2 CLATHRIN ADAPTOR CORE IN ACTIVE COMPLEX WITH CARGO PEPTIDES
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

105-442 2xa7B 10%
[Model]
69-610 2xa7B 9%
[Model]
110-484 2xa7A 12%
[Model]
93-207 2xa7B 13%
[Model]
71-485 2xa7B 9%
[Model]
30-484 2xa7B 10%
[Model]
141-581 2xa7B 8%
[Model]
261-624 2xa7A 11%
[Model]
28-441 2xa7B 10%
[Model]
315-614 2xa7B 12%
[Model]
332-441 2xa7B 10%
[Model]
4-635 2xa7A 20%
[Model]
26-634 2xa7B 14%
[Model]
331-346 2xa7B 0%
[Model]

1qbk: STRUCTURE OF THE KARYOPHERIN BETA2-RAN GPPNHP NUCLEAR TRANSPORT COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

97-207 1qbkB 10%
[Model]
130-211 1qbkB 11%
[Model]
345-405 1qbkB 11%
[Model]
343-403 1qbkB 12%
[Model]
70-441 1qbkB 11%
[Model]
69-207 1qbkB 11%
[Model]
417-440 1qbkB 4%
[Model]
561-581 1qbkB 5%
[Model]

3tjz: CRYSTAL STRUCTURE OF ARF1 BOUND TO THE GAMMA/ZETA-COP CORE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

23-362 3tjzE 12%
[Model]
20-362 3tjzB 12%
[Model]

2jkt: AP2 CLATHRIN ADAPTOR CORE WITH CD4 DILEUCINE PEPTIDE RM( PHOSPHOS)EIKRLLSE Q TO E MUTANT
Solved by: X-RAY, Resolution: 3.4A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

86-441 2jktA 11%
[Model]
100-440 2jktA 10%
[Model]
69-609 2jktB 8%
[Model]
105-206 2jktB 12%
[Model]
91-208 2jktB 13%
[Model]
52-485 2jktB 9%
[Model]
140-581 2jktB 7%
[Model]
29-441 2jktB 10%
[Model]
29-484 2jktB 10%
[Model]
316-614 2jktB 12%
[Model]
317-442 2jktB 13%
[Model]
332-440 2jktB 10%
[Model]
60-435 2jktA 12%
[Model]
4-635 2jktA 20%
[Model]
27-634 2jktB 14%
[Model]
86-441 2jktL 11%
[Model]
100-440 2jktL 10%
[Model]
69-609 2jktE 8%
[Model]
105-206 2jktE 12%
[Model]
91-208 2jktE 13%
[Model]
52-485 2jktE 9%
[Model]
140-581 2jktE 7%
[Model]
29-441 2jktE 10%
[Model]
29-484 2jktE 10%
[Model]
316-614 2jktE 12%
[Model]
317-442 2jktE 13%
[Model]
332-440 2jktE 10%
[Model]
60-435 2jktL 12%
[Model]
4-635 2jktL 20%
[Model]
27-634 2jktE 14%
[Model]

2jkr: AP2 CLATHRIN ADAPTOR CORE WITH DILEUCINE PEPTIDE RM( PHOSPHOS)QIKRLLSE
Solved by: X-RAY, Resolution: 3.4A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

86-441 2jkrA 11%
[Model]
100-440 2jkrA 10%
[Model]
69-609 2jkrB 8%
[Model]
105-206 2jkrB 12%
[Model]
91-208 2jkrB 13%
[Model]
52-485 2jkrB 9%
[Model]
140-581 2jkrB 7%
[Model]
29-441 2jkrB 10%
[Model]
29-484 2jkrB 10%
[Model]
316-614 2jkrB 12%