SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures

Sequence
UniProt Q14246 EGF-like module-containing mucin-like hormone receptor-like 1 (EGF-like module receptor 1)
Homo sapiens (Human).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

STRING
Q14246: 9606.ENSP0000031

Domain
Link to: [ InterPro ]
7tm_2
GPS
EGF_CA
EGF_CA
EGF_CA
EGF_CA
cEGF

Model 3D Structure
Model information:
Modelled residue range: 129 to 204
Based on template: [ 1emo ]  
Sequence Identity [%]: 40%
Model date: 2014-04-10
Revision date: 2014-04-08

Quaternary structure information: [details]
Template (1emo): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: CA: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2014-04-08. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1       SCTDINEC LTSSVCPEHS DCVNSMGSYS CSCQVGFISR NSTCEDVDEC
1emoA     2124    savdmdec kepdvc-khg qcintdgsyr cecpfgyila gnecvdtdec
                                                                      
TARGET                                sssss  sss ss   sssss   sssss   
1emoA                                 sssss  sss ss   sssss   sssss  h


TARGET    49    ADPRACPEHA TCNNTVGNYS CFCNPGFE - ------               
1emoA     2171  svgnpc-gng tcknviggfe ctceegfepg pmmtce               
                                                                      
TARGET                     sss      s ss                              
1emoA           h          sss      s ss                              



Quality


Template's ligands section
Ligands in the template: CA: 2.
Ligands in the template that will be assessed: CA2224, CA2225.
Model's ligands section
CA2224
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand A.CA2224 will not be included in the final model.
CA2224: conservation:False, RMSD:False, included: False

CA2225
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand A.CA2225 will not be included in the final model.
CA2225: conservation:False, RMSD:False, included: False

No ligands were included in the model.


Quaternary Structure Annotation of the Template
1emo is annotated as MONOMER
The template structure (1emo) was solved by NMR and does not contain any quaternary structure annotation
The template is annotated by the number of chains found in the PDB file

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 40.789) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:9d934ea451abb9b6e287cef6798400f7 on BC2-cluster at Thu Apr 10 19:10:40
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with P found
 - No template with A found
 - No template with P found
 - No template with A found
 - No template with P found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with P found
 - No template with A found
 - No template with P found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with A found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:15): model based on new templates
 - Send 15 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -             *******
 - building model based on 1emnA (129-204) was not successful go to next best template
 -             *******
 - building model based on 1emoA (129-204) was successful 
 -         ***********
 - building model based on 2bouA (91-208) was successful 
 -                 ***********
 - building model based on 2bouA (180-302) was successful 
 -              ***********
 - building model based on 2bo2B (142-258) was successful 
 -    ******
 - building model based on 2boxA (38-108) was successful 
 -     ***********
 - building model based on 2boxA (41-159) was successful 
 -             ****************
 - building model based on 1uzjB (131-305) was successful 
 -                     **************
 - building model based on 3p5cL (218-367) was successful 
 -                                                             *****************
 - building model based on 4l6rA (664-854) was not successful go to next best template
 -                                                        **********************
 - building model based on 4k5yC (604-848) was successful 
 -        ***************
 - building model based on 1n7dA (83-250) was successful 
 -                                    ******************
 - building model based on 4dlqA (387-584) was not successful go to next best template
 -      **************
 - building model based on 4cc0A (55-210) was successful 
 -      *******************
 - building model based on 4cbzA (53-257) was successful 
 -   *****************
 - building model based on 4cbzA (25-211) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:9d934ea451abb9b6e287cef6798400f7 on BC2-cluster at Thu Apr 10 19:15:37
2014 




Template Description
Match Chain SeqId

1n1i: THE STRUCTURE OF MSP-1(19) FROM PLASMODIUM KNOWLESI
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

134-207 1n1iA 17%
[Model]
179-255 1n1iA 21%
[Model]
227-306 1n1iA 17%
[Model]
31-115 1n1iA 18%
[Model]
90-171 1n1iA 15%
[Model]
134-207 1n1iB 17%
[Model]
179-254 1n1iB 20%
[Model]
227-306 1n1iB 19%
[Model]
32-115 1n1iB 19%
[Model]
90-171 1n1iB 15%
[Model]
135-207 1n1iC 18%
[Model]
180-254 1n1iC 20%
[Model]
228-307 1n1iC 19%
[Model]
32-115 1n1iC 19%
[Model]
90-170 1n1iC 16%
[Model]
142-200 1n1iD 21%
[Model]
180-254 1n1iD 20%
[Model]
227-306 1n1iD 19%
[Model]
31-115 1n1iD 19%
[Model]
81-170 1n1iD 14%
[Model]
41-65 1n1iD 24%
[Model]

2vj2: HUMAN JAGGED-1, DOMAINS DSL AND EGFS1-3
Solved by: X-RAY, Resolution: 2.5A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

108-306 2vj2A 12%
[Model]
159-307 2vj2A 11%
[Model]
41-118 2vj2A 20%
[Model]
41-169 2vj2A 17%
[Model]
54-209 2vj2A 16%
[Model]
58-256 2vj2A 16%
[Model]
107-306 2vj2B 12%
[Model]
155-209 2vj2B 23%
[Model]
158-307 2vj2B 10%
[Model]
54-169 2vj2B 17%
[Model]
57-256 2vj2B 15%
[Model]
90-117 2vj2B 38%
[Model]
91-118 2vj2B 21%
[Model]
242-255 2vj2A 21%
[Model]

2mgp: STRUCTURE OF PLASMODIUM YOELII MEROZOITE SURFACE PROTEIN 1TERMINAL DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

136-205 2mgpA 19%
[Model]
32-114 2mgpA 19%
[Model]
91-113 2mgpA 25%
[Model]

2mgr: STRUCTURE OF PLASMODIUM YOELII MEROZOITE SURFACE PROTEIN 1TERMINAL DOMAIN, E28K MUTANT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

136-204 2mgrA 19%
[Model]
32-114 2mgrA 19%
[Model]
91-113 2mgrA 25%
[Model]

4cc1: NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
Solved by: X-RAY, Resolution: 2.84A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-307 4cc1A 13%
[Model]
153-308 4cc1A 12%
[Model]
193-306 4cc1A 11%
[Model]
41-169 4cc1A 18%
[Model]
55-210 4cc1A 17%
[Model]
53-257 4cc1A 17%
[Model]
103-307 4cc1B 13%
[Model]
153-308 4cc1B 12%
[Model]
193-306 4cc1B 11%
[Model]
41-169 4cc1B 18%
[Model]
55-210 4cc1B 17%
[Model]
53-257 4cc1B 17%
[Model]

1b9w: C-TERMINAL MEROZOITE SURFACE PROTEIN 1 FROM PLASMODIUM CYNOMOLGI
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

142-200 1b9wA 19%
[Model]
180-249 1b9wA 19%
[Model]
228-305 1b9wA 18%
[Model]
33-113 1b9wA 20%
[Model]
89-171 1b9wA 14%
[Model]

2npr: STRUCTURAL STUDIES ON PLASMODIUM VIVAX MEROZOITE SURFACE PROTEIN-1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

140-207 2nprA 18%
[Model]
180-252 2nprA 17%
[Model]
227-302 2nprA 17%
[Model]
32-116 2nprA 21%
[Model]
90-165 2nprA 16%
[Model]

4n4w: STRUCTURE OF THE HUMAN SMOOTHENED RECEPTOR IN COMPLEX WITH
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

602-778 4n4wA 14%
[Model]

4jkv: STRUCTURE OF THE HUMAN SMOOTHENED 7TM RECEPTOR IN COMPLEX ANTITUMOR AGENT
Solved by: X-RAY, Resolution: 2.45A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

603-778 4jkvB 14%
[Model]
603-778 4jkvA 14%
[Model]

4o9r: HUMAN SMOOTHENED RECEPTOR STRUCTURE IN COMPLEX WITH CYCLOP
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

603-774 4o9rA 13%
[Model]

4cbz: NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-258 4cbzB 11%
[Model]
102-307 4cbzA 13%
[Model]
152-307 4cbzA 12%
[Model]
154-307 4cbzB 12%
[Model]
194-306 4cbzA 11%
[Model]
194-307 4cbzB 10%
[Model]
23-169 4cbzB 13%
[Model]
41-169 4cbzA 18%
[Model]
53-211 4cbzB 14%
[Model]
53-257 4cbzA 17%
[Model]
25-211 4cbzA 16%
[Model]
240-256 4cbzB 12%
[Model]

4bv0: HIGH RESOLUTION STRUCTURE OF EVOLVED AGONIST-BOUND NEUROTENSIN RECEPTOR 1 MUTANT WITHOUT LYSOZYME FUSION
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

602-861 4bv0A 12%
[Model]
602-862 4bv0B 10%
[Model]

4buo: HIGH RESOLUTION STRUCTURE OF THERMOSTABLE AGONIST-BOUND NEUROTENSIN RECEPTOR 1 MUTANT WITHOUT LYSOZYME FUSION
Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

605-861 4buoB 11%
[Model]
600-859 4buoA 12%
[Model]

4bwb: STRUCTURE OF EVOLVED AGONIST-BOUND NEUROTENSIN RECEPTOR 1 MUTANT WITHOUT LYSOZYME FUSION
Solved by: X-RAY, Resolution: 3.57A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

601-861 4bwbA 12%
[Model]
602-859 4bwbB 11%
[Model]

4cc0: NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
Solved by: X-RAY, Resolution: 2.32A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

103-307 4cc0A 13%
[Model]
153-308 4cc0A 12%
[Model]
193-306 4cc0A 11%
[Model]
41-169 4cc0A 18%
[Model]
53-257 4cc0A 17%
[Model]
103-258 4cc0B 12%
[Model]
153-307 4cc0B 12%
[Model]
193-306 4cc0B 10%
[Model]
44-169 4cc0B 11%
[Model]
53-210 4cc0B 14%
[Model]
55-210 4cc0A 17%
[Model]
240-257 4cc0B 11%
[Model]

3zev: STRUCTURE OF THERMOSTABLE AGONIST-BOUND NEUROTENSIN RECEPTOR 1 MUTANT WITHOUT LYSOZYME FUSION
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

609-861 3zevB 11%
[Model]
600-861 3zevA 12%
[Model]

4or2: HUMAN CLASS C G PROTEIN-COUPLED METABOTROPIC GLUTAMATE RECCOMPLEX WITH A NEGATIVE ALLOSTERIC MODULATOR
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

605-733 4or2B 11%
[Model]
605-732 4or2A 10%
[Model]

2kb9: HUMAN JAGGED-1, EXON 6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

57-118 2kb9A 10%
[Model]

4n6h: 1.8 A STRUCTURE OF THE HUMAN DELTA OPIOID 7TM RECEPTOR
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

602-861 4n6hA 9%
[Model]

4ntj: STRUCTURE OF THE HUMAN P2Y12 RECEPTOR IN COMPLEX WITH AN ANTITHROMBOTIC DRUG
Solved by: X-RAY, Resolution: 2.62A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

600-727 4ntjA 8%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.