SWISS-MODEL Repository - Model Details

Model Overview
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1
519

Sequence
UniProt Q1RMT7
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
RIO1

Model 3D Structure
Model information:
Modelled residue range: 219 to 470
Based on template: [ 1zp9 ]  
Sequence Identity [%]: 34%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    219                    RLHE KKEHSTAEKA VDPKTRLLMY KMVNSGMLET
1zp9A     3     dlkkiesyld klri--kekd geerkiyaev ldgrtlktly klsakgyita
                                                                      
TARGET                                  hhhhhhh    hhhhhhhh hhhhh ssss
1zp9A            hhhhhhhhh hh           hhhhhhh    hhhhhhhh hhhhh ssss


TARGET    253   ITGCISTGKE SVVFHAYGGS MEDGKEDSKV IPTECAIKVF KTTLNEFKNR
1zp9A     52    xggvistgke anvfyadg-- vfdgk----- -pvaxavkiy r-------ix
                                                                      
TARGET          ssssssss s sssssssss               ssssssss s         
1zp9A           ssssssss s ssssssss   ss  s       sssssssss s         


TARGET    303   DKYIKDDFRF KDRFSKLNPR KIIRMWAEKE MHNLTRMQRA GIPCPTVVLL
1zp9A     93    deylygderf d------xpk ekvfiwteke frnlerakea gvsvpqpyty
                                                                      
TARGET                                hhhhhhhhhh hhhhhhhhhh      sssss
1zp9A                               h hhhhhhhhhh hhhhhhhhh       sssss


TARGET    353   KKHILVMSFI GHDQVPAPK- -LKEVKLSSE EMKDAYYQTL HLMQQLYDEC
1zp9A     142   xknvllxefi gedelpaptl velgrelkel dvegifndvv envkrlyqea
                                                                      
TARGET          s ssssssss ss  sss         hhh    hhhhhhhhh hhhhhhhhh 
1zp9A           s ssssssss ss  ssssss hh   hhh    hhhhhhhhh hhhhhhhhh 


TARGET    401   TLVHADLSEY NMLWHAGKVW LIDVSQSVEP THPHGLEFLF RDCRNVSQFF
1zp9A     191   elvhadlsey nixyi-dkvy fidxgqavtl rhpxaesyle rdvrniirff
                                                                      
TARGET                     sssss  sss ss            hhhhhhh hhhhhhhhhh
1zp9A           sss        ssss     s ss     sss    hhhhhhh hhhhhhhhhh


TARGET    451   QKGGVKEALG ERELFNAVSG                                 
1zp9A     240   skygvka--d feexlkevkg e                               
                                                                      
TARGET          h          hhhhhhhhh                                  
1zp9A           h          hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 07c4f6132deceed80f28bdf2f3bbd787 on BC2-cluster at Sun Aug 31 17:13:20 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>07c4f6132deceed80f28bdf2f3bbd787
***************************************************************************************
>1zp9A Evalue:8.5E-38 SeqID:34.252 Method:HHSEARCH Type:MODEL
------------------------------------**********-**-**-*************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1zp9A          219            470            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 07c4f6132deceed80f28bdf2f3bbd787 on gopt-70.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 17:17:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.