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Model Overview
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1
284

Sequence
UniProt Q22866
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Tropomyosin

Model 3D Structure
Model information:
Modelled residue range: 98 to 233
Based on template: [ 4a7f ]  
Sequence Identity [%]: 61%
Model date: 2013-05-06
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (4a7fH): Unknown
Model: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

TARGET    1       ELERAEER LKIATEKLEE ATHNVDESER VRKVMENRSL QDEERANTVE
4a7fH     98      eldraqer latalqklee aekaadeser gmkviesraq kdeekmeiqe
                                                                      
TARGET             hhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh
4a7fH              hhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET    49    AQLKEAQLLA EEADRKYDEV ARKLAMVEAD LERAEERAEA GENKIVELEE
4a7fH     146   iqlkeakhia edadrkyeev arklviiesd leraeerael segkcaelee
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh
4a7fH           hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET    99    ELRVVGNNLK SLEVSEEKAL QREDSYEEQI RTVSSRLK             
4a7fH     196   elktvtnnlk sleaqaekys qkedkyeeei kvlsdklk-            
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhh             
4a7fH           hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Oligomer Annotation of the Template structure 
 Sorry, we haven't found any oligomeric annotation for this template. 
 Either the complex was too large (>60 chains) or the structures was excluded for other reasons. 
 Please contact help@swissmodel.org for more information!

Template Selection 
 - Start SMR-Pipeline for:c5812c1b2c2ff53bdc19697817e028df on BC2-cluster at Mon May  6 07:05:30
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                             **************************************
 - building model based on 4a7fH (98-233) was successful 
 - *******************************************************************************
 - building model based on 1c1gC (1-282) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:c5812c1b2c2ff53bdc19697817e028df on BC2-cluster at Mon May  6 07:23:57
2013


Template Description
Match Chain SeqId

4a7l: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

98-233 4a7lB 61%
[Model]
98-233 4a7lH 61%
[Model]

4a7h: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 7.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

98-233 4a7hH 61%
[Model]
98-233 4a7hB 61%
[Model]

4a7f: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 7.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

98-233 4a7fH 61%
[Model]
98-233 4a7fB 61%
[Model]

2d3e: CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF RABBIT SKELETAL ALPHA-TROPOMYOSIN
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

155-282 2d3eA 56%
[Model]
155-282 2d3eD 56%
[Model]
155-282 2d3eC 56%
[Model]
155-282 2d3eB 56%
[Model]

1ic2: DECIPHERING THE DESIGN OF THE TROPOMYOSIN MOLECULE
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-77 1ic2A 49%
[Model]
1-76 1ic2B 50%
[Model]
1-77 1ic2C 49%
[Model]
1-76 1ic2D 50%
[Model]

3u1a: N-TERMINAL 81-AA FRAGMENT OF SMOOTH MUSCLE TROPOMYOSIN ALP
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-79 3u1aA 37%
[Model]
1-79 3u1aB 37%
[Model]
1-79 3u1aC 37%
[Model]
1-77 3u1aD 38%
[Model]

3u1c: ANTI-PARALLEL DIMER OF N-TERMINAL 98-AA FRAGMENT OF SMOOTHTROPOMYOSIN ALPHA
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-253 3u1cA 26%
[Model]
1-97 3u1cA 43%
[Model]
42-140 3u1cA 19%
[Model]
165-253 3u1cB 26%
[Model]
1-97 3u1cB 43%
[Model]
42-140 3u1cB 19%
[Model]

3u59: N-TERMINAL 98-AA FRAGMENT OF SMOOTH MUSCLE TROPOMYOSIN BET
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-97 3u59B 49%
[Model]
1-97 3u59A 49%
[Model]
1-97 3u59C 49%
[Model]
1-94 3u59D 49%
[Model]
42-135 3u59D 24%
[Model]

2b9c: STRUCTURE OF TROPOMYOSIN'S MID-REGION: BENDING AND BINDINGSITES FOR ACTIN
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

120-230 2b9cA 55%
[Model]
130-232 2b9cB 52%
[Model]
22-155 2b9cA 21%
[Model]
14-148 2b9cA 16%
[Model]
7-141 2b9cA 20%
[Model]

2xs8: CRYSTAL STRUCTURE OF ALIX IN COMPLEX WITH THE SIVAGMTAN-1 AYDPARKLL LATE DOMAIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2xs8A 18%
[Model]

2r05: CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLASL LATE DOMAIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2r05A 18%
[Model]

2r02: CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLTSL LATE DOMAIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2r02A 18%
[Model]

2oev: CRYSTAL STRUCTURE OF ALIX/AIP1
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2oevA 18%
[Model]

1c1g: CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTIONIN THE SPERMINE-INDUCED CRYSTAL FORM
Solved by: X-RAY, Resolution: 7.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-256 1c1gB 15%
[Model]
2-256 1c1gA 15%
[Model]
4-253 1c1gB 18%
[Model]
4-253 1c1gA 18%
[Model]
5-245 1c1gB 18%
[Model]
5-245 1c1gA 18%
[Model]
2-237 1c1gB 21%
[Model]
2-237 1c1gA 21%
[Model]
1-283 1c1gB 58%
[Model]
1-283 1c1gA 58%
[Model]
2-275 1c1gB 18%
[Model]
2-275 1c1gA 18%
[Model]
9-281 1c1gB 16%
[Model]
9-281 1c1gA 16%
[Model]
16-281 1c1gB 13%
[Model]
16-281 1c1gA 13%
[Model]
24-282 1c1gB 13%
[Model]
24-282 1c1gA 13%
[Model]
31-282 1c1gB 18%
[Model]
31-282 1c1gA 18%
[Model]
3-220 1c1gB 17%
[Model]
3-220 1c1gA 17%
[Model]
3-124 1c1gB 18%
[Model]
3-124 1c1gA 18%
[Model]
46-281 1c1gB 22%
[Model]
46-281 1c1gA 22%
[Model]
52-278 1c1gB 18%
[Model]
52-278 1c1gA 18%
[Model]
61-100 1c1gB 25%
[Model]
61-100 1c1gA 25%
[Model]
2-256 1c1gC 15%
[Model]
2-256 1c1gD 15%
[Model]
4-253 1c1gC 18%
[Model]
4-253 1c1gD 18%
[Model]
5-245 1c1gC 18%
[Model]
5-245 1c1gD 18%
[Model]
2-237 1c1gC 21%
[Model]
2-237 1c1gD 21%
[Model]
1-283 1c1gC 58%
[Model]
1-283 1c1gD 58%
[Model]
2-275 1c1gC 18%
[Model]
2-275 1c1gD 18%
[Model]
9-281 1c1gC 16%
[Model]
9-281 1c1gD 16%
[Model]
16-281 1c1gC 13%
[Model]
16-281 1c1gD 13%
[Model]
24-282 1c1gC 13%
[Model]
24-282 1c1gD 13%
[Model]
31-282 1c1gC 18%
[Model]
31-282 1c1gD 18%
[Model]
3-220 1c1gC 17%
[Model]
3-220 1c1gD 17%
[Model]
3-124 1c1gC 18%
[Model]
3-124 1c1gD 18%
[Model]
46-281 1c1gC 22%
[Model]
46-281 1c1gD 22%
[Model]
52-278 1c1gC 18%
[Model]
52-278 1c1gD 18%
[Model]
61-100 1c1gC 25%
[Model]
61-100 1c1gD 25%
[Model]

2xs1: CRYSTAL STRUCTURE OF ALIX IN COMPLEX WITH THE SIVMAC239 PYKEVTEDL LATE DOMAIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2xs1A 18%
[Model]

2r03: CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE YPDL LATE DOMAIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

251-284 2r03A 18%
[Model]

2w4u: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLFROZEN AFTER A LENGTH STEP
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

8-283 2w4uV 57%
[Model]
8-283 2w4uU 57%
[Model]
8-283 2w4uB 57%
[Model]
28-283 2w4uA 57%
[Model]
1-275 2w4uV 18%
[Model]
1-275 2w4uU 18%
[Model]
1-275 2w4uB 18%
[Model]
2-259 2w4uV 15%
[Model]
2-259 2w4uU 15%
[Model]
2-259 2w4uB 15%
[Model]
166-259 2w4uA 14%
[Model]
203-275 2w4uA 14%
[Model]
141-267 2w4uA 12%
[Model]
10-255 2w4uA 18%
[Model]
20-281 2w4uV 17%
[Model]
20-281 2w4uU 17%
[Model]
20-281 2w4uB 17%
[Model]
3-254 2w4uV 18%
[Model]
3-254 2w4uU 18%
[Model]
3-254 2w4uB 18%
[Model]
4-107 2w4uA 30%
[Model]
2-246 2w4uA 19%
[Model]
36-281 2w4uA 17%
[Model]
24-280 2w4uV 13%
[Model]
24-280 2w4uU 13%
[Model]
24-280 2w4uB 13%
[Model]
41-278 2w4uA 13%
[Model]
40-100 2w4uV 11%
[Model]
40-100 2w4uU 11%
[Model]
40-100 2w4uB 11%
[Model]
3-236 2w4uA 15%
[Model]
41-246 2w4uV 18%
[Model]
41-246 2w4uU 18%
[Model]
41-246 2w4uB 18%
[Model]
139-279 2w4uA 21%
[Model]
38-282 2w4uV 16%
[Model]
38-282 2w4uU 16%
[Model]
38-282 2w4uB 16%
[Model]
2-220 2w4uA 20%
[Model]
134-280 2w4uA 18%
[Model]
2-239 2w4uV 23%
[Model]
2-239 2w4uU 23%
[Model]
2-239 2w4uB 23%
[Model]
201-270 2w4uV 20%
[Model]
201-270 2w4uU 20%
[Model]
201-270 2w4uB 20%
[Model]
216-277 2w4uA 15%
[Model]
4-232 2w4uV 12%
[Model]
4-232 2w4uU 12%
[Model]
4-232 2w4uB 12%
[Model]
53-280 2w4uV 21%
[Model]
53-280 2w4uU 21%
[Model]
53-280 2w4uB 21%
[Model]
4-151 2w4uV 17%
[Model]
4-151 2w4uU 17%
[Model]
4-151 2w4uB 17%
[Model]
60-281 2w4uV 16%
[Model]
60-281 2w4uU 16%
[Model]
60-281 2w4uB 16%
[Model]

2w49: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCL
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

8-283 2w49V 57%
[Model]
8-283 2w49U 57%
[Model]
8-283 2w49B 57%
[Model]
8-283 2w49A 57%
[Model]
1-275 2w49V 18%
[Model]
1-275 2w49U 18%
[Model]
1-275 2w49B 18%
[Model]
1-275 2w49A 18%
[Model]
2-259 2w49V 15%
[Model]
2-259 2w49U 15%
[Model]
2-259 2w49B 15%
[Model]
2-259 2w49A 15%
[Model]
20-281 2w49V 17%
[Model]
20-281 2w49U 17%
[Model]
20-281 2w49B 17%
[Model]
20-281 2w49A 17%
[Model]
3-254 2w49V 18%
[Model]
3-254 2w49U 18%
[Model]
3-254 2w49B 18%
[Model]
3-254 2w49A 18%
[Model]
24-280 2w49V 13%
[Model]
24-280 2w49U 13%
[Model]
24-280 2w49B 13%
[Model]
24-280 2w49A 13%
[Model]
40-100 2w49V 11%
[Model]
40-100 2w49U 11%
[Model]
40-100 2w49B 11%
[Model]
40-100 2w49A 11%
[Model]
41-246 2w49V 18%
[Model]
41-246 2w49U 18%
[Model]
41-246 2w49B 18%
[Model]
41-246 2w49A 18%
[Model]
38-282 2w49V 16%
[Model]
38-282 2w49U 16%
[Model]
38-282 2w49B 16%
[Model]
38-282 2w49A 16%
[Model]
2-239 2w49V 23%
[Model]
2-239 2w49U 23%
[Model]
2-239 2w49B 23%
[Model]
2-239 2w49A 23%
[Model]
201-270 2w49V 20%
[Model]
201-270 2w49U 20%
[Model]
201-270 2w49B 20%
[Model]
201-270 2w49A 20%
[Model]
4-232 2w49V 12%
[Model]
4-232 2w49U 12%
[Model]
4-232 2w49B 12%
[Model]
4-232 2w49A 12%
[Model]
53-280 2w49V 21%
[Model]
53-280 2w49U 21%
[Model]
53-280 2w49B 21%
[Model]
53-280 2w49A 21%
[Model]
4-151 2w49V 17%
[Model]
4-151 2w49U 17%
[Model]
4-151 2w49B 17%
[Model]
4-151 2w49A 17%
[Model]
60-281 2w49V 16%
[Model]
60-281 2w49U 16%
[Model]
60-281 2w49B 16%
[Model]
60-281 2w49A 16%
[Model]

2ojq: CRYSTAL STRUCTURE OF ALIX V DOMAIN
Solved by: X-RAY, Resolution: 2.87A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-228 2ojqA 9%
[Model]
26-281 2ojqA 12%
[Model]
20-282 2ojqA 11%
[Model]
251-284 2ojqA 18%
[Model]
267-273 2ojqA 0%
[Model]

2ch7: CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF A BACTERIALCHEMORECEPTOR FROM THERMOTOGA MARITIMA
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-62 2ch7B 10%
[Model]
190-284 2ch7A 14%
[Model]
187-284 2ch7B 13%
[Model]
192-272 2ch7A 9%
[Model]
1-236 2ch7A 9%
[Model]
1-233 2ch7B 9%
[Model]
219-272 2ch7B 9%
[Model]
221-273 2ch7A 11%
[Model]
49-284 2ch7B 8%
[Model]
50-284 2ch7A 7%
[Model]
8-46 2ch7B 3%
[Model]
4-51 2ch7A 2%
[Model]
4-46 2ch7B 2%
[Model]
7-53 2ch7B 4%
[Model]
6-54 2ch7B 16%
[Model]
15-61 2ch7A 9%
[Model]
6-60 2ch7B 9%
[Model]
247-258 2ch7A 8%
[Model]
248-256 2ch7A 11%
[Model]
29-36 2ch7B 13%
[Model]
245-254 2ch7A 30%
[Model]

2oex: STRUCTURE OF ALIX/AIP1 V DOMAIN
Solved by: X-RAY, Resolution: 2.58A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-240 2oexB 6%
[Model]
251-284 2oexA 18%
[Model]
252-284 2oexB 18%
[Model]
266-273 2oexA 0%
[Model]
265-272 2oexB 13%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.