SWISS-MODEL Repository - Model Details

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1
1687

Sequence
UniProt Q25452 Muscle calcium channel subunit alpha-1 (MDL-alpha-1)
Musca domestica (House fly).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
Ion_trans
Ion_trans
Ion_trans
Ion_trans
Ca_chan_IQ

Model 3D Structure
Model information:
Modelled residue range: 1503 to 1528
Based on template: [ 2be6 ]  
Sequence Identity [%]: 88%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1503    EVTVGKFY ATYLIQDYFR RFKKRKEQ - -                    
2be6D     1612    evtvgkfy atfliqeyfr kfkkrkeqgl v                    
                                                                      
TARGET              hhhhhh hhhhhhhhhh hhhhhhhh                        
2be6D               hhhhhh hhhhhhhhhh hhhhhhhh                        



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: 73e2d4a2b1a471f6aba81d6ba05c18bd on BC2-cluster at Fri Aug 29 23:38:10 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>73e2d4a2b1a471f6aba81d6ba05c18bd
*********************************************************************************
>2be6D Evalue:4.98082e-06 SeqID:88.462 Method:BLAST Type:MODEL
------------------------------------------------------------------------*--------
>1orqC Evalue:4.9E-07 SeqID:9.412 Method:HHSEARCH Type:MODEL
---****--------------------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2be6D          1503           1528           BLAST          BUILT          
1orqC          56             140            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 73e2d4a2b1a471f6aba81d6ba05c18bd on gopt-75.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 23:49:41 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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