SWISS-MODEL Repository - Model Details

Model Overview
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1
289

Sequence
UniProt Q28FN6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q28FN6: 8364.ENSXETP0000

Domain
Link to: [ InterPro ]
Homeobox
TF_Otx

Model 3D Structure
Model information:
Modelled residue range: 39 to 106
Based on template: [ 2dms ]  
Sequence Identity [%]: 98%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    39             R RERTTFTRAQ LDVLEALFAK TRYPDIFMRE EVALKINLPE
2dmsA     1     gssgssg--r rerttftraq ldvlealfak trypdifmre evalkinlpe
                                                                      
TARGET                            hhh hhhhhhhhhh      hhhhh hhhhh     
2dmsA                             hhh hhhhhhhhhh      hhhhh hhhhh     


TARGET    80    SRVQVWFKNR RAKCRQQQQQ QQNGGQN -- --                   
2dmsA     49    srvqvwfknr rakcrqqqqq qqnggqsgps sg                   
                                                                      
TARGET          hhhhhhhhhh hhhhhh                                     
2dmsA           hhhhhhhhhh hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d5014fd5607dfe22bfd4d42abb739b3c on BC2-cluster at Sun Aug 31 06:54:51 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>d5014fd5607dfe22bfd4d42abb739b3c
*************************************************************************
>2dmsA Evalue:1.47494e-27 SeqID:98.529 Method:BLAST Type:MODEL
---------******************----------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2dmsA          39             106            BLAST          BUILT          

FINISHED PIPELINE ON ID: d5014fd5607dfe22bfd4d42abb739b3c on gopt-61.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 06:56:59 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.