SWISS-MODEL Repository - Model Details

Model Overview
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1
530

Sequence
UniProt Q2HJG2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
RRM_1
RRM_1

Model 3D Structure
Model information:
Modelled residue range: 414 to 530
Based on template: [ 2dny ]  
Sequence Identity [%]: 92%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    414       SGSSAR HMVMQKLLRK QESTVMVLRN MVDPKDIDDD LEGEVTEECG
2dnyA     430   gs--sgssg- -----kllrk qestvmvlrn mvdpkdiddd legevteecg
                                                                      
TARGET                                   ssssss           h hhhhhhhhhh
2dnyA                                    ssssss           h hhhhhhhhhh


TARGET    460   KFGAVNRVII YQEKQGEEED AEIIVKIFVE FSVASETHKA IQDLNGRWFA
2dnyA     472   kfgavnrvii yqekqgeeed aeiivkifve fsiasethka iqalngrwfa
                                                                      
TARGET          h  sssssss s               sssss ss  hhhhhh hhhh  sss 
2dnyA           h  sssssss s               sssss ss  hhhhhh hhhh  sss 


TARGET    510   GRKVVAEVYD QERFDNSDLS A -----                         
2dnyA     522   grkvvaevyd qerfdnsdls asgpssg                         
                                                                      
TARGET           ssssssss  hhhh                                       
2dnyA            ssssssss  hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1dc1378628f142eca718b83e1e95ccbb on BC2-cluster at Sun Aug 31 18:00:38 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>1dc1378628f142eca718b83e1e95ccbb
****************************************************************************
>2qfjB Evalue:8.20784e-103 SeqID:98.446 Method:BLAST Type:MODEL
-------------***************************------------------------------------
>2dnyA Evalue:5.3499e-54 SeqID:92.308 Method:BLAST Type:MODEL
-----------------------------------------------------------*-***************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2qfjB          89             281            BLAST          BUILT          
2dnyA          414            530            BLAST          BUILT          

FINISHED PIPELINE ON ID: 1dc1378628f142eca718b83e1e95ccbb on gopt-73.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 18:04:50 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.