SWISS-MODEL Repository - Model Details

Model Overview
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1
297

Sequence
UniProt Q2V9B0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Myb_DNA-binding

Model 3D Structure
Model information:
Modelled residue range: 89 to 146
Based on template: [ 1irz ]  
Sequence Identity [%]: 29%
Model date: 2008-07-30
Revision date: 2008-07-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    89       RERKRGV PWTEEEHKLF LLGLQKVG-- KGDWRGISRN F-VKTRTPTQ
1irzA     1     t--aqkkprv lwthelhnkf laavdhlgve ravpkkildl mnvdkltren
                                                                      
TARGET                        hhhhhhh hhhhhhh       hhhhhh          hh
1irzA                         hhhhhhh hhhhhh        hhhhhhh h       hh


TARGET    133   VASHAQKYFL RRSN -                                     
1irzA     49    vashlqkfrv alkkvs                                     
                                                                      
TARGET          hhhhhhhhhh hh                                         
1irzA           hhhhhhhhhh hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ec90bcdfef985416b80a0a92b946b9e1 on BC2-cluster at Wed Jul 30 13:47:30 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>ec90bcdfef985416b80a0a92b946b9e1
***************************************************************************
>1irzA Evalue:6.6E-14 SeqID:29.508 Method:HHSEARCH Type:MODEL
----------------------***************--------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1irzA          89             146            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: ec90bcdfef985416b80a0a92b946b9e1 on gopt-23.cluster.bc2.ch BC2-Cluster at
Wed Jul 30 13:50:42 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.