SWISS-MODEL Repository - Model Details

Model Overview
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1
232

Sequence
UniProt Q31KC5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
NanE

Model 3D Structure
Model information:
Modelled residue range: 2 to 228
Based on template: [ 1yxy ]  
Sequence Identity [%]: 34%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2         DRQQQL RRLQGGLIVS CQAPADSPLH Q--PEIIAAI AVAAVQRGAV
1yxyA     4     kp--tkeklm eqlkggiivs cqalpgeply setggimplm akaaqeagav
                                                                      
TARGET               hhhhh hhh    sss s                hhhh hhhhhhh   
1yxyA                hhhhh hhh    sss s                hhhh hhhhhhh   


TARGET    46    GIRLDTPEHV RAVRDRLPET PIIGLWKRTF PDSSVYITPR YVEAEAIAAA
1yxyA     52    giransvrdi keiqa-itdl piigiikkdy ppqepfitat mtevdqlaal
                                                                      
TARGET          sssssshhhh hhhhh      ssssssss        sss   hhhhhhhhh 
1yxyA           sssssshhhh hhhh       ssssssss        sss   hhhhhhhhh 


TARGET    96    GADIVALDCT LRPRPDGEDF CQIIPRLQQE L-GCAVMADI DTLEAAIAAA
1yxyA     101   niaviamdct krdrhdgldi asfirqvkek ypnqllmadi stfdeglvah
                                                                      
TARGET             ssssss           h hhhhhhhhhh     ssssss   hhhhhhhh
1yxyA              ssssss           h hhhhhhhhhh     ssssss   hhhhhhhh


TARGET    145   KAGADLVGTT LYGYTEATQG QTPPGWDLLE TAAQQLPNTP VICEGGIASA
1yxyA     151   qagidfvgtt lsgytpysrq eagpdvalie alcka--gia viaegkihsp
                                                                      
TARGET          hh   sss                   hhhhh hhhh       sss      h
1yxyA           hh   sss                   hhhhh hhhh       sss      h


TARGET    195   QAARQACDRG AFAVVVGTAI TGIDLQVQAY VTAL                 
1yxyA     199   eeakkindlg vagivvggai trpkeiaerf iealk                
                                                                      
TARGET          hhhhhhhh     ssss       hhhhhhhh hhh                  
1yxyA           hhhhhhhh     ssss       hhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6eb34ab02efb422ab67df2cfc2ca3b8a on BC2-cluster at Sun Aug 31 05:39:30 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>6eb34ab02efb422ab67df2cfc2ca3b8a
******************************************************************************
>1yxyA Evalue:5.7E-39 SeqID:34.348 Method:HHSEARCH Type:MODEL
****************************************************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1yxyA          2              228            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 6eb34ab02efb422ab67df2cfc2ca3b8a on gopt-51.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 05:42:18 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.