SWISS-MODEL Repository - Model Details

Model Overview
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1
391

Sequence
UniProt Q39218
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q39218: 3702.AT3G13110.1

Domain
Link to: [ InterPro ]
Hexapep
SATase_N

Model 3D Structure
Model information:
Modelled residue range: 317 to 358
Based on template: [ 3fs8 ]  
Sequence Identity [%]: 54%
Model date: 2013-02-20
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3fs8): TRIMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ACO: 1, TDR: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

                                                       
3fs8A     3     nnisksaiik egviigenvt iednvyidyg ciirdnvhik kgsfigarsi
                                                                      
                                                       
3fs8A            sss   sss    sss  ss ss  ssss   ssss sssss   ssss  ss


                                                       
3fs8A     53    lgeylvdfyn drinkkhpli igenalirte nviygdtiig dnfqtghkvt
                                                                      
                                                       
3fs8A           ss    hhh          ss ss  sss    ssss  ssss    sss  ss


                                                       
3fs8A     103   irentkignn vkigtlsdiq hhvyignyvn ihsnvfvgek siikdfvwlf
                                                                      
                                                       
3fs8A           ss  ssss   ssss  ssss   ssss  ss ss  ssss   ssss  ssss


TARGET    1                                  LIG AGTCILGNIT IGEGAKIGAG
3fs8A     153   phvvltndpt ppsnellgvt ielfa--via arsvvlpgih inedalvgag
                                                                      
TARGET                                       sss    sss         ssss  
3fs8A             ssss             ss ss  s  sss   ssss  ss s   ssss  


TARGET    24    SVVLKDVPPR TTAVGNPAR  ---------- ---------- ----------
3fs8A     201   avvtkdvpke tvvvgnpare icsirkiknk itgeqvypwr ytfkrgmpwe
                                                                      
TARGET          sss        sss                                        
3fs8A           sss      s sssss  sss ssss  sss     sss               


TARGET          ---------- -                                          
3fs8A     251   etdydtwikn i                                          
                                                                      
TARGET                                                                
3fs8A              hhhhhhh                                            



Quality


Template's ligands section
Ligands in the template: ACO: 1, TDR: 1.
Ligands in the template that will be assessed: ACO300.
Model's ligands section
ACO300
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand A.ACO300 will not be included in the model.
ACO300: conservation:False, RMSD:False, included: False

No ligands were included in the model.


Quaternary Structure Annotation of the Template
3fs8 is annotated as TRIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3fs8.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 54.762) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:ce639e21095ab8850e998ff67af12b4c on BC2-cluster at Wed Feb 20 01:03:01
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with D found
 - No template with D found
 - No template with D found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with F found
 - No template with E found
 - No template with E found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with F found
 - No template with A found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with C found
 - No template with D found
 - No template with F found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with C found
 - No template with F found
 - No template with D found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with C found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with C found
 - No template with A found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                                  *********
 - building model based on 3fs8A (317-358) was successful 
 -                          *****************************************************
 - building model based on 3gvdA (121-379) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:ce639e21095ab8850e998ff67af12b4c on BC2-cluster at Wed Feb 20 01:18:24
2013 




Template Description
Match Chain SeqId

4hus: CRYSTAL STRUCTURE OF STREPTOGRAMIN GROUP A ANTIBIOTIC ACETYLTRANSFERASE VATA FROM STAPHYLOCOCCUS AUREUS IN COMPVIRGINIAMYCIN M1
Solved by: X-RAY, Resolution: 2.36A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

258-371 4husC 19%
[Model]
257-364 4husB 21%
[Model]
257-366 4husA 20%
[Model]
259-352 4husB 13%
[Model]
259-354 4husC 13%
[Model]
259-352 4husA 14%
[Model]
259-365 4husA 12%
[Model]
277-330 4husB 14%
[Model]
283-339 4husA 26%
[Model]
283-339 4husB 26%
[Model]
283-338 4husC 27%
[Model]
277-317 4husB 22%
[Model]
285-357 4husB 16%
[Model]
285-367 4husC 15%
[Model]
308-360 4husB 19%
[Model]
309-352 4husA 23%
[Model]
308-352 4husC 22%
[Model]
277-300 4husA 4%
[Model]
278-300 4husC 35%
[Model]
328-339 4husB 42%
[Model]
283-302 4husA 10%
[Model]
277-301 4husA 32%
[Model]
265-272 4husB 25%
[Model]
277-301 4husC 4%
[Model]
265-272 4husA 25%
[Model]

3r8y: STRUCTURE OF THE BACILLUS ANTHRACIS TETRAHYDROPICOLINATE SUCCINYLTRANSFERASE
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

124-361 3r8yB 22%
[Model]
255-361 3r8yA 35%
[Model]
254-361 3r8yC 28%
[Model]
255-352 3r8yA 22%
[Model]
256-360 3r8yB 21%
[Model]
259-359 3r8yC 19%
[Model]
256-354 3r8yA 19%
[Model]
252-354 3r8yB 19%
[Model]
257-343 3r8yA 15%
[Model]
257-349 3r8yB 16%
[Model]
265-340 3r8yC 22%
[Model]
261-300 3r8yA 25%
[Model]
258-292 3r8yB 17%
[Model]
257-300 3r8yB 24%
[Model]
260-330 3r8yB 17%
[Model]
279-342 3r8yA 27%
[Model]
278-343 3r8yB 26%
[Model]
279-354 3r8yA 22%
[Model]
284-346 3r8yC 22%
[Model]
278-345 3r8yB 24%
[Model]
277-347 3r8yC 20%
[Model]
281-345 3r8yB 22%
[Model]
276-345 3r8yC 23%
[Model]
311-342 3r8yA 34%
[Model]
309-336 3r8yC 14%
[Model]
309-337 3r8yC 21%
[Model]
310-345 3r8yB 31%
[Model]
310-343 3r8yA 44%
[Model]
310-343 3r8yC 21%
[Model]
313-343 3r8yA 26%
[Model]
310-343 3r8yA 24%
[Model]
311-343 3r8yB 45%
[Model]
309-345 3r8yA 27%
[Model]
310-345 3r8yC 22%
[Model]
311-343 3r8yC 45%
[Model]
312-344 3r8yB 24%
[Model]
310-344 3r8yB 29%
[Model]
124-360 3r8yE 22%
[Model]
255-361 3r8yD 35%
[Model]
256-361 3r8yF 35%
[Model]
255-352 3r8yD 22%
[Model]
255-352 3r8yF 22%
[Model]
256-353 3r8yE 21%
[Model]
256-354 3r8yD 19%
[Model]
256-354 3r8yF 20%
[Model]
265-344 3r8yF 23%
[Model]
251-354 3r8yE 19%
[Model]
257-343 3r8yD 15%
[Model]
257-343 3r8yF 15%
[Model]
260-301 3r8yF 24%
[Model]
261-300 3r8yD 25%
[Model]
257-292 3r8yE 17%
[Model]
260-331 3r8yE 17%
[Model]
279-342 3r8yD 27%
[Model]
279-342 3r8yE 27%
[Model]
277-347 3r8yE 23%
[Model]
278-354 3r8yF 22%
[Model]
279-354 3r8yD 22%
[Model]
281-345 3r8yE 22%
[Model]
281-343 3r8yF 21%
[Model]
310-358 3r8yF 36%
[Model]
311-342 3r8yD 34%
[Model]
310-345 3r8yF 31%
[Model]
310-345 3r8yE 31%
[Model]
310-343 3r8yD 44%
[Model]
313-343 3r8yD 26%
[Model]
313-343 3r8yF 26%
[Model]
310-343 3r8yD 24%
[Model]
311-343 3r8yE 45%
[Model]
309-345 3r8yD 27%
[Model]
309-345 3r8yF 27%
[Model]
309-345 3r8yE 27%
[Model]
311-345 3r8yE 23%
[Model]
312-348 3r8yE 22%
[Model]
310-326 3r8yB 24%
[Model]
310-328 3r8yA 21%
[Model]
310-328 3r8yD 21%
[Model]
310-328 3r8yF 21%
[Model]
310-327 3r8yE 22%
[Model]
279-300 3r8yA 36%
[Model]
279-300 3r8yD 36%
[Model]
258-272 3r8yC 33%
[Model]
278-300 3r8yE 35%
[Model]

3cj8: CRYSTAL STRUCTURE OF 2,3,4,5-TETRAHYDROPYRIDINE-2- CARBOXYLATE N-SUCCINYLTRANSFERASE FROM ENTEROCOCCUS FAECALIS V583
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

256-361 3cj8B 26%
[Model]
257-362 3cj8C 25%
[Model]
256-362 3cj8A 26%
[Model]
255-352 3cj8B 21%
[Model]
255-346 3cj8A 23%
[Model]
255-352 3cj8C 21%
[Model]
260-343 3cj8A 20%
[Model]
255-347 3cj8A 15%
[Model]
261-343 3cj8B 20%
[Model]
252-344 3cj8B 19%
[Model]
253-336 3cj8C 15%
[Model]
261-331 3cj8C 15%
[Model]
256-330 3cj8B 14%
[Model]
264-298 3cj8B 14%
[Model]
263-298 3cj8A 14%
[Model]
258-293 3cj8A 22%
[Model]
275-305 3cj8B 23%
[Model]
282-326 3cj8C 20%
[Model]
276-328 3cj8A 20%
[Model]
276-328 3cj8C 20%
[Model]
278-345 3cj8C 19%
[Model]
277-346 3cj8B 19%
[Model]
284-345 3cj8C 19%
[Model]
276-345 3cj8A 17%
[Model]
281-318 3cj8A 18%
[Model]
278-345 3cj8B 18%
[Model]
284-336 3cj8B 17%
[Model]
276-349 3cj8C 18%
[Model]
311-340 3cj8C 37%
[Model]
310-344 3cj8A 29%
[Model]
310-345 3cj8A 31%
[Model]
311-343 3cj8B 30%
[Model]
311-345 3cj8A 23%
[Model]
311-343 3cj8A 30%
[Model]
311-343 3cj8C 30%
[Model]
311-345 3cj8C 23%
[Model]
311-345 3cj8B 23%
[Model]
310-345 3cj8B 31%
[Model]
310-345 3cj8C 31%
[Model]
312-344 3cj8C 24%
[Model]
309-345 3cj8A 22%
[Model]
255-274 3cj8B 25%
[Model]
278-300 3cj8A 35%
[Model]
278-300 3cj8C 35%
[Model]
277-301 3cj8B 32%
[Model]

4hur: CRYSTAL STRUCTURE OF STREPTOGRAMIN GROUP A ANTIBIOTIC ACETYLTRANSFERASE VATA FROM STAPHYLOCOCCUS AUREUS IN COMPACETYL COENZYME A
Solved by: X-RAY, Resolution: 2.15A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

255-363 4hurA 20%
[Model]
255-363 4hurB 20%
[Model]
257-365 4hurC 20%
[Model]
260-346 4hurA 15%
[Model]
260-346 4hurB 15%
[Model]
259-353 4hurC 14%
[Model]
259-367 4hurA 12%
[Model]
259-367 4hurB 12%
[Model]
259-366 4hurC 12%
[Model]
277-330 4hurA 14%
[Model]
277-330 4hurB 14%
[Model]
277-330 4hurC 14%
[Model]
277-318 4hurC 21%
[Model]
283-337 4hurA 27%
[Model]
283-337 4hurB 27%
[Model]
284-337 4hurC 28%
[Model]
281-343 4hurA 13%
[Model]
281-343 4hurB 13%
[Model]
309-357 4hurA 21%
[Model]
309-357 4hurB 21%
[Model]
309-360 4hurC 20%
[Model]
277-301 4hurA 32%
[Model]
277-301 4hurB 32%
[Model]
264-273 4hurA 20%
[Model]
264-273 4hurB 20%
[Model]

4e6t: STRUCTURE OF LPXA FROM ACINETOBACTER BAUMANNII AT 1.8A RES(P212121 FORM)
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

259-355 4e6tB 15%
[Model]
260-345 4e6tC 16%
[Model]
257-352 4e6tC 11%
[Model]
259-345 4e6tC 14%
[Model]
257-300 4e6tA 23%
[Model]
257-300 4e6tB 23%
[Model]
257-302 4e6tA 13%
[Model]
259-299 4e6tB 15%
[Model]
258-324 4e6tA 19%
[Model]
284-345 4e6tA 21%
[Model]
284-345 4e6tC 10%
[Model]
279-343 4e6tB 23%
[Model]
310-360 4e6tC 21%
[Model]
309-362 4e6tA 41%
[Model]
308-362 4e6tB 40%
[Model]
308-363 4e6tC 39%
[Model]
310-355 4e6tA 17%
[Model]
310-355 4e6tB 17%
[Model]
310-355 4e6tC 17%
[Model]
310-345 4e6tB 16%
[Model]
310-344 4e6tC 23%
[Model]
310-345 4e6tB 22%
[Model]
312-340 4e6tC 24%
[Model]
310-342 4e6tA 27%
[Model]
310-342 4e6tB 24%
[Model]
310-342 4e6tA 24%
[Model]
310-343 4e6tB 26%
[Model]
311-343 4e6tC 18%
[Model]
310-335 4e6tC 19%
[Model]
310-343 4e6tB 12%
[Model]
312-342 4e6tB 19%
[Model]
312-342 4e6tA 19%
[Model]
310-352 4e6tA 9%
[Model]
310-343 4e6tC 18%
[Model]
317-345 4e6tB 17%
[Model]
260-274 4e6tA 20%
[Model]
260-270 4e6tB 27%
[Model]
312-324 4e6tB 31%
[Model]
310-326 4e6tC 35%
[Model]
280-300 4e6tA 29%
[Model]
279-292 4e6tA 21%
[Model]
309-327 4e6tA 32%
[Model]

4e8l: CRYSTAL STRUCTURE OF STREPTOGRAMIN GROUP A ANTIBIOTIC ACETYLTRANSFERASE VATA FROM STAPHYLOCOCCUS AUREUS
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

255-363 4e8lC 20%
[Model]
256-365 4e8lA 20%
[Model]
257-363 4e8lB 21%
[Model]
259-352 4e8lB 14%
[Model]
260-346 4e8lC 15%
[Model]
259-346 4e8lA 15%
[Model]
264-296 4e8lA 15%
[Model]
258-365 4e8lB 14%
[Model]
258-366 4e8lA 12%
[Model]
259-367 4e8lC 12%
[Model]
277-330 4e8lA 14%
[Model]
277-330 4e8lC 14%
[Model]
276-330 4e8lB 13%
[Model]
283-337 4e8lC 27%
[Model]
283-337 4e8lB 27%
[Model]
283-337 4e8lA 27%
[Model]
282-342 4e8lA 13%
[Model]
281-343 4e8lC 13%
[Model]
308-360 4e8lB 19%
[Model]
309-357 4e8lC 21%
[Model]
308-358 4e8lA 20%
[Model]
277-301 4e8lB 32%
[Model]
277-301 4e8lC 32%
[Model]
277-300 4e8lA 33%
[Model]
326-342 4e8lB 29%
[Model]
264-273 4e8lC 20%
[Model]

4e6u: STRUCTURE OF LPXA FROM ACINETOBACTER BAUMANNII AT 1.4A RESFORM)
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

260-345 4e6uA 16%
[Model]
257-352 4e6uA 11%
[Model]
259-345 4e6uA 14%
[Model]
284-345 4e6uA 10%
[Model]
310-360 4e6uA 21%
[Model]
308-363 4e6uA 39%
[Model]
310-355 4e6uA 17%
[Model]
310-344 4e6uA 23%
[Model]
312-340 4e6uA 24%
[Model]
311-343 4e6uA 18%
[Model]
310-335 4e6uA 19%
[Model]
310-343 4e6uA 18%
[Model]
310-326 4e6uA 35%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.