SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
326

Sequence
UniProt Q3B8Q0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
CH
EB1

Model 3D Structure
Model information:
Modelled residue range: 38 to 191
Based on template: [ 1wyo ]  
Sequence Identity [%]: 77%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    38        SYSWGM AVNVYSTSIT QETMSRHDII AWVNDIVSLN YTKVEQLCSG
1wyoA     1     gs--sgssgm avnvystsvt senlsrhdml awvndslhln ytkieqlcsg
                                                                      
TARGET                                     hhhhh hhhhh          hhhh  
1wyoA                                      hhhhh hhhh           hhhh  


TARGET    84    AAYCQFMDML FPGCISLKKV KFQAKLEHEY IHNFKLLQAS FKRMNVDKVI
1wyoA     49    aaycqfmdml fpgcvhlrkv kfqaklehey ihnfkvlqaa fkkmgvdkii
                                                                      
TARGET           hhhhhhhhh                   hhh hhhhhhhhhh hhhh      
1wyoA            hhhhhhhhh                   hhh hhhhhhhhhh hhhh      


TARGET    134   PVEKLVKGRF QDNLDFIQWF KKFYDANYDG KEYDPVEARQ GQDAIPPPDP
1wyoA     99    pveklvkgkf qdnfefiqwf kkffdanydg kdynpllarq gqdvapppnp
                                                                      
TARGET           hhhhh     hhhhhhhhhh hhhhh           hh              
1wyoA            hhhhh     hhhhhhhhhh hhhhh           hh              


TARGET    184   GEQIFNLP - -                                          
1wyoA     149   gdqifsgpss g                                          
                                                                      
TARGET                                                                
1wyoA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 92fd19e8378bf5dcfb1d4d82f2279c79 on BC2-cluster at Sat Aug 30 19:07:18 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>92fd19e8378bf5dcfb1d4d82f2279c79
**********************************************************************************
>1wyoA Evalue:2.74982e-72 SeqID:77.922 Method:BLAST Type:MODEL
---------***************************************----------------------------------
>2hl5B Evalue:3.62193e-14 SeqID:61.404 Method:BLAST Type:MODEL
-------------------------------------------------------------**************-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1wyoA          38             191            BLAST          BUILT          
2hl5B          245            301            BLAST          BUILT          

FINISHED PIPELINE ON ID: 92fd19e8378bf5dcfb1d4d82f2279c79 on gopt-26.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 19:10:53 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.