SWISS-MODEL Repository - Model Details

Model Overview
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1
326

Sequence
UniProt Q3B8Q0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
CH
EB1

Model 3D Structure
Model information:
Modelled residue range: 245 to 301
Based on template: [ 2hl5 ]  
Sequence Identity [%]: 61%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    245      QLNEQVH SLKLALEGVE KERDFYFGKL REIELLCQEH GQENDDLVQR
2hl5B     194   a--elmqqvn vlkltvedle kerdfyfgkl rnielicqen egendpvlqr
                                                                      
TARGET               hhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhh       hhhhh
2hl5B                 hhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhh       hhhhh


TARGET    292   LMEVLYASDE                                            
2hl5B     242   ivdilyatde g                                          
                                                                      
TARGET          hhhhhh                                                
2hl5B           hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 92fd19e8378bf5dcfb1d4d82f2279c79 on BC2-cluster at Sat Aug 30 19:07:18 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>92fd19e8378bf5dcfb1d4d82f2279c79
**********************************************************************************
>1wyoA Evalue:2.74982e-72 SeqID:77.922 Method:BLAST Type:MODEL
---------***************************************----------------------------------
>2hl5B Evalue:3.62193e-14 SeqID:61.404 Method:BLAST Type:MODEL
-------------------------------------------------------------**************-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1wyoA          38             191            BLAST          BUILT          
2hl5B          245            301            BLAST          BUILT          

FINISHED PIPELINE ON ID: 92fd19e8378bf5dcfb1d4d82f2279c79 on gopt-26.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 19:10:53 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.