SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
255

Sequence
UniProt Q3M5J9
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
ABC_tran

Model 3D Structure
Model information:
Modelled residue range: 9 to 228
Based on template: [ 2it1 ]  
Sequence Identity [%]: 39%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    9         RINILD LTKAFGHKTV LNSLNLEVAP GEFIAIVGRS GCGKSTLLRL
2it1A     1     mv--eiklen ivkkfgnfta lnninlkikd gefmallgps gsgkstllyt
                                                                      
TARGET              ssssss sss        ssssssss    ssssss       hhhhhhh
2it1A               ssssss sss        ssssssss    sssssss      hhhhhhh


TARGET    55    VSGLDKPTTG GILLDGEPLR KLS---HSVR VMFQEPRLLP WKRVIDNVGL
2it1A     49    iagiykptsg kiyfdekdvt elppkdrnvg lvfqnwalyp hmtvykniaf
                                                                      
TARGET          hh         sssss sss           s ssss          hhhhhhh
2it1A           hh         sssss sss      hh   s ssss          hhhhhhh


TARGET    102   GLQEN----- -WQSKATWVL EQVGLKDRAG EWPHVLSGGQ RQRVALARAL
2it1A     99    plelrkapre eidkkvreva kmlhidklln rypwqlsggq qqrvaiaral
                                                                      
TARGET          hh              hhhhh hhh               hhh hhhhhhhhhh
2it1A           hhhhh   hh hhhhhhhhhh hhh               hhh hhhhhhhhhh


TARGET    146   VSQPHLLLLD EPLGALDALT RLEMQYLIED LWRERGFTAF LVTHDVEEAV
2it1A     149   vkepevllld eplsnldall rlevraelkr lqkelgittv yvthdqaeal
                                                                      
TARGET               sssss s hh   hhh hhhhhhhhhh hhhhh  sss sss  hhhhh
2it1A                sssss s hh   hhh hhhhhhhhhh hhhhh  sss sss  hhhhh


TARGET    196   ALADRVIVIE EGRIMLDLPV R--LPRPRDR ASELF ---- ----------
2it1A     199   amadriavir egeilqvgtp devyykpkyk fvggflgnpp mnfveakved
                                                                      
TARGET          hh  ssssss   ssssss            h hhhh                 
2it1A           hh  ssssss   ssssss h hhhhh  sss hhhh        ssssssss 


TARGET          ---------- ---------- ---------- ---------- ----------
2it1A     249   gklviteksk lpipkqyvei vketgitevi igfrphdaei vkgegegivg
                                                                      
TARGET                                                                
2it1A            ssss   ss s      hhh hhhh  ssss sss     ss sss    sss


TARGET          ---------- ---------- ---------- ---------- ----------
2it1A     299   evysfeplgr eqivtvsvnd sivkvfapeg ehfsfgekvt ikvkeellvl
                                                                      
TARGET                                                                
2it1A           ssssssss   ssssssss   sssssss          ssss ss      ss


TARGET          ---------- ----                                       
2it1A     349   fdkktekale fskl                                       
                                                                      
TARGET                                                                
2it1A           sss  ssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: bc02027c105f74c92a09af433d243154 on BC2-cluster at Mon Sep  1 04:03:41 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>bc02027c105f74c92a09af433d243154
*************************************************************************************
>2it1A Evalue:0 SeqID:39.394 Method:HHSEARCH Type:MODEL
---*************************************************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2it1A          9              228            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: bc02027c105f74c92a09af433d243154 on gopt-79.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 04:05:53 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.