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Model Overview
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1
417

Sequence
UniProt Q3TNH5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Arb2

Model 3D Structure
Model information:
Modelled residue range: 265 to 324
Based on template: [ 2g4l ]  
Sequence Identity [%]: 24%
Model date: 2014-10-08
Revision date: 2014-10-06

Quaternary structure information: [details]
Template (2g4l): DIMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ALA: 1, CL: 1, SO4: 4.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

                                                       
2g4lA     2     afahfvliht ichgawiwhk lkpllealgh kvtaldlaas gvdprqiee-
                                                                      
                                                       
2g4lA             ssssss           hh hhhhhhh    sss                  


TARGET    1      NGSPEEHAV YVWDHFIAQA AA-ENVFFVA HSYGGLAFVE LMIQREADVK
2g4lA     51    -igsfdeyse pl-ltfleal ppgekvilvg escgglnia- iaadkye---
                                                                      
TARGET              hhh    hhhhhhhh          sss    hhhhhh            
2g4lA               hhh    hh hhhhh         ssss ss hhhhhh  hh        


TARGET    49    SKVTAVALTD SV ------- ---------- ---------- ----------
2g4lA     96    -kiaaavfhn svlpdtehcp syvvdklmev fpdwkdttyf tytkdgkeit
                                                                      
TARGET              sssss                                             
2g4lA               ssssss            hhhhhhhhhh        sss ssss  ssss


TARGET          ---------- ---------- ---------- ---------- ----------
2g4lA     145   glklgftllr enlytlcgpe eyelakmltr kgslfqnila krpfftkegy
                                                                      
TARGET                                                                
2g4lA           sss  hhhhh h       hh hhhhhhh         hhhhh h         


TARGET          ---------- ---------- ---------- ---------- ----------
2g4lA     195   gsikkiyvwt dqdeiflpef qlwqienykp dkvykveggd hklqltktke
                                                                      
TARGET                                                                
2g4lA              ssssss         hhh hhhhhhh     sssss             hh


TARGET          ---------- ---                                        
2g4lA     245   iaeilqevad tyn                                        
                                                                      
TARGET                                                                
2g4lA           hhhhhhhhhh h                                          



Quality


Template's ligands section
Ligands in the template: ALA: 1, CL: 1, SO4: 4.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
2g4l is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 2g4l.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 24.590) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Wed Oct  8 10:00:58
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                    ************
 - building model based on 2g4lA (265-324) was successful 
 -                              **********************************
 - building model based on 1sciA (149-324) was successful 
 -                        ****************************************
 - building model based on 3qitA (118-327) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Wed Oct  8 10:02:36
2014 




Template Description
Match Chain SeqId

2g4l: ANOMALOUS SUBSTRUCTURE OF HYDROXYNITRILE LYASE
Solved by: X-RAY, Resolution: 1.84A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-324 2g4lA 25%
[Model]

6yas: HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS, ROOM TEMPERATURE STRUCTURE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 6yasA 24%
[Model]

3c6z: HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 3c6zA 24%
[Model]

2yas: HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS COMPLEXED WITRHODANIDE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 2yasA 24%
[Model]

1sc9: HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS IN COMPLEX WITH THE NATURAL SUBSTRATE ACETONE CYANOHYDRIN
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1sc9A 24%
[Model]

3c6x: HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 3c6xA 24%
[Model]

4yas: HYDROXYNITRILE LYASE COMPLEXED WITH CHLORALHYDRATE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 4yasA 24%
[Model]

3yas: HYDROXYNITRILE LYASE COMPLEXED WITH ACETONE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 3yasA 24%
[Model]

1yb6: HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS IN COMPLEX WITH MANDELONITRILE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1yb6A 24%
[Model]

1yb7: HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS IN COMPLEX WITH 2,3-DIMETHYL-2-HYDROXY-BUTYRONITRILE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1yb7A 24%
[Model]

7yas: HYDROXYNITRILE LYASE, LOW TEMPERATURE NATIVE STRUCTURE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 7yasA 24%
[Model]

3c70: HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 3c70A 24%
[Model]

3c6y: HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 3c6yA 24%
[Model]

5yas: HYDROXYNITRILE LYASE COMPLEXED WITH HEXAFLUOROACETONE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 5yasA 24%
[Model]

1yas: HYDROXYNITRILE LYASE COMPLEXED WITH HISTIDINE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1yasA 24%
[Model]

1qj4: HYDROXYNITRILE-LYASE FROM HEVEA BRASILIENSIS AT ATOMIC RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1qj4A 24%
[Model]

3rkt: CRYSTAL STRUCTURE OF THE MANIHOT ESCULENTA HYDROXYNITRILE (MEHNL) 3KP TRIPLE MUTANT
Solved by: X-RAY, Resolution: 2.91A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-324 3rktA 20%
[Model]
266-324 3rktF 20%
[Model]
266-324 3rktB 20%
[Model]
266-324 3rktE 20%
[Model]
266-324 3rktH 20%
[Model]
266-324 3rktC 20%
[Model]
266-324 3rktD 20%
[Model]
266-324 3rktG 20%
[Model]

3rks: CRYSTAL STRUCTURE OF THE MANIHOT ESCULENTA HYDROXYNITRILE (MEHNL) K176P MUTANT
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

267-315 3rksA 20%
[Model]
267-315 3rksC 20%
[Model]
267-315 3rksB 20%
[Model]
267-315 3rksD 20%
[Model]

1eb8: STRUCTURE DETERMINANTS OF SUBSTRATE SPECIFICITY OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-324 1eb8B 13%
[Model]
265-325 1eb8A 19%
[Model]

1dwp: CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA AT 2.2 ANGSTROM RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1dwpB 19%
[Model]
265-325 1dwpA 19%
[Model]

1eb9: STRUCTURE DETERMINANTS OF SUBSTRATE SPECIFICITY OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-324 1eb9B 13%
[Model]
265-325 1eb9A 19%
[Model]

1dwo: CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA IN COMPLEX WITH SUBSTRATES ACETONE AND CHLOROACETONE:IMPLICATIONS FOR THE MECHANISM OF CYANOGENESIS
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 1dwoB 19%
[Model]
265-325 1dwoA 19%
[Model]

1e8d: MECHANISTIC ASPECTS OF CYANOGENESIS FROM ACTIVE SITE MUTANSER80ALA OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA ICOMPLEX WITH ACETONE CYANOHYDRIN
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-325 1e8dB 18%
[Model]
265-324 1e8dA 18%
[Model]

1e89: ON THE MECHANISM OF CYANOGENESIS CATALYZED BY HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA. CRYSTAL STRUCTURE OF ACTIVE SITE MUTANT SER80ALA IN COMPLEX WITH ACETONE CYANOHYDRIN
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-325 1e89B 18%
[Model]
265-324 1e89A 18%
[Model]

1dwq: CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM MANIHOT ESCULENTA IN COMPLEX WITH SUBSTRATES ACETONE AND CHLOROACETONE:IMPLICATIONS FOR THE MECHANISM OF CYANOGENESIS
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-324 1dwqA 12%
[Model]
266-324 1dwqB 18%
[Model]

2o2i: CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE RV2579 FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 1,3-PROPANDIOL
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-326 2o2iA 16%
[Model]

1scq: K236L MUTANT OF HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS IN COMPLEX WITH ACETONECYANOHYDRIN
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-324 1scqA 16%
[Model]

2o2h: CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE RV2579 FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 1,2- DICHLOROETHANE
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 2o2hA 16%
[Model]

1sci: K236L MUTANT OF HYDROXYNITRILE LYASE FROM HEVEA BRASILIENS
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-324 1sciA 16%
[Model]

1sck: K236L MUTANT OF HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS IN COMPLEX WITH ACETONE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-324 1sckA 16%
[Model]

2qvb: CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE RV2579 FROM MYCOBACTERIUM TUBERCULOSIS
Solved by: X-RAY, Resolution: 1.19A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-324 2qvbA 15%
[Model]
266-325 2qvbB 15%
[Model]

3qit: THIOESTERASE DOMAIN FROM CURACIN BIOSYNTHETIC PATHWAY
Solved by: X-RAY, Resolution: 1.68A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

267-329 3qitB 16%
[Model]
118-329 3qitD 8%
[Model]
118-328 3qitC 9%
[Model]
118-327 3qitA 10%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.