SWISS-MODEL Repository - Model Details

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1
417

Sequence
UniProt Q3TNH5 Protein FAM172A
Mus musculus (Mouse).
Database: Swiss-Prot (Reviewed) manually annotated and reviewed

Domain
Link to: [ InterPro ]
Arb2

Model 3D Structure
Model information:
Modelled residue range: 283 to 325
Based on template: [ 3pe6 ]  
Sequence Identity [%]: 18%
Model date: 2014-04-11
Revision date: 2014-04-08

Quaternary structure information: [details]
Template (3pe6): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ZYH: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2014-04-08. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

                                                       
3pe6A     7     prrtpqsipy qdlphlvnad gqylfcrywa ptgtpkalif vshgagehsg
                                                                      
                                                       
3pe6A            sss   sss    sssss    ssssssss        ssss ss        


                                                       
3pe6A     57    ryeelarmlm gldllvfahd hvghgqsege rmvvsdfhvf vrdvlqhvds
                                                                      
                                                       
3pe6A             hhhhhhhh h   ssssss                   hhh hhhhhhhhhh


TARGET    1           AAAE NVFFVAHSYG GLAFVELMIQ READVKSKVT AVALTDSVH 
3pe6A     107   mqkd--ypgl pvfllghsmg gaiailtaae rp----ghfa gmvlisplvl
                                                                      
TARGET                        ssssshh hhhhhhhhh  sss  sss   sssss     
3pe6A           hhhh       sssssssshh hhhhhhhhh             ssssss   s


TARGET          ---------- ---------- ---------- ---------- ----------
3pe6A     151   anpesattfk vlaakvlnsv lpnlssgpid ssvlsrnkte vdiynsdpli
                                                                      
TARGET                                                                
3pe6A           sshhhhhhhh hhhhhhhh                     hhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
3pe6A     201   craglkvcfg iqllnavsrv eralpkltvp flllqgsadr lcdskgayll
                                                                      
TARGET                                                                
3pe6A                 hhhh hhhhhhhhhh hhhhhh   s sssssss    sss hhhhhh


TARGET          ---------- ---------- ---------- ---------- -----     
3pe6A     251   melaksqdkt lkiyegayhv lhkelpevtn svfheinmwv sqrta     
                                                                      
TARGET                                                                
3pe6A           hhh    sss ssss            hhhhh hhhhhhhhhh hhh       



Quality


Template's ligands section
Ligands in the template: ZYH: 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3pe6 is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3pe6.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 18.605) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Fri Apr 11 05:15:59
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                       ********
 - building model based on 3pe6A (283-325) was successful 
 -                              *************************************
 - building model based on 3icvA (149-342) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Fri Apr 11 05:17:06
2014 




Template Description
Match Chain SeqId

3pe6: CRYSTAL STRUCTURE OF A SOLUBLE FORM OF HUMAN MGLL IN COMPLINHIBITOR
Solved by: X-RAY, Resolution: 1.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

283-325 3pe6A 19%
[Model]

4meb: CRYSTAL STRUCTURE OF ACIF-D158S
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

265-325 4mebA 18%
[Model]
265-325 4mebB 18%
[Model]

3jwe: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE IN COMPLEWITH SAR629
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-324 3jweA 11%
[Model]
273-325 3jweB 17%
[Model]

3jw8: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

270-324 3jw8A 16%
[Model]
273-325 3jw8B 17%
[Model]

3hju: CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

271-325 3hjuA 16%
[Model]
271-324 3hjuB 17%
[Model]

4mea: CRYSTAL STRUCTURE OF THE CIF EPOXIDE HYDROLASE FROM ACINETNOSOCOMIALIS
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

266-325 4meaA 16%
[Model]
265-325 4meaB 16%
[Model]

3icv: STRUCTURAL CONSEQUENCES OF A CIRCULAR PERMUTATION ON LIPASB FROM CANDIDA ANTARTICA
Solved by: X-RAY, Resolution: 1.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-342 3icvA 12%
[Model]

4k6g: CRYSTAL STRUCTURE OF CALB FROM CANDIDA ANTARCTICA
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-317 4k6gA 11%
[Model]
137-325 4k6gB 9%
[Model]

4k5q: CRYSTAL STRUCTURE OF CALB MUTANT DGLM FROM CANDIDA ANTARCT
Solved by: X-RAY, Resolution: 1.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-316 4k5qA 11%
[Model]

4k6k: CRYSTAL STRUCTURE OF CALB MUTANT D223G FROM CANDIDA ANTARC
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

147-318 4k6kB 10%
[Model]
147-317 4k6kA 10%
[Model]

4k6h: CRYSTAL STRUCTURE OF CALB MUTANT L278M FROM CANDIDA ANTARC
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

147-325 4k6hA 10%
[Model]
147-318 4k6hB 10%
[Model]

3icw: STRUCTURE OF A CIRCULAR PERMUTATION ON LIPASE B FROM CANDIANTARTICA WITH BOUND SUICIDE INHIBITOR
Solved by: X-RAY, Resolution: 1.69A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

149-342 3icwA 10%
[Model]

3w9b: CRYSTAL STRUCTURE OF CANDIDA ANTARCTICA LIPASE B WITH ANIO
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 3w9bA 9%
[Model]
148-318 3w9bB 9%
[Model]
148-318 3w9bD 9%
[Model]
148-318 3w9bC 9%
[Model]

1tcb: THE SEQUENCE, CRYSTAL STRUCTURE DETERMINATION AND REFINEMENT OF TWO CRYSTAL FORMS OF LIPASE B FROM CANDIDA ANTARCTICA
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 1tcbA 9%
[Model]
148-318 1tcbB 9%
[Model]

1lbt: LIPASE (E.C.3.1.1.3) (TRIACYLGLYCEROL HYDROLASE)
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 1lbtA 9%
[Model]
148-318 1lbtB 9%
[Model]

1tca: THE SEQUENCE, CRYSTAL STRUCTURE DETERMINATION AND REFINEMENT OF TWO CRYSTAL FORMS OF LIPASE B FROM CANDIDA ANTARCTICA
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 1tcaA 9%
[Model]

1lbs: LIPASE (E.C.3.1.1.3) (TRIACYLGLYCEROL HYDROLASE)
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 1lbsA 9%
[Model]
148-318 1lbsB 9%
[Model]
148-318 1lbsC 9%
[Model]
148-318 1lbsD 9%
[Model]
148-318 1lbsE 9%
[Model]
148-318 1lbsF 9%
[Model]

1tcc: THE SEQUENCE, CRYSTAL STRUCTURE DETERMINATION AND REFINEMENT OF TWO CRYSTAL FORMS OF LIPASE B FROM CANDIDA ANTARCTICA
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-318 1tccA 9%
[Model]
148-318 1tccB 9%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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