SWISS-MODEL Repository - Model Details

Model Overview
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1
417

Sequence
UniProt Q3TNH5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Arb2

Model 3D Structure
Model information:
Modelled residue range: 282 to 327
Based on template: [ 3pe6 ]  
Sequence Identity [%]: 17%
Model date: 2015-02-06
Revision date: 2015-02-05

Quaternary structure information: [details]
Template (3pe6): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ZYH: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

                                                       
3pe6A     7     prrtpqsipy qdlphlvnad gqylfcrywa ptgtpkalif vshgagehsg
                                                                      
                                                       
3pe6A            sss   sss    sssss    ssssssss        ssss ss        


                                                       
3pe6A     57    ryeelarmlm gldllvfahd hvghgqsege rmvvsdfhvf vrdvlqhvds
                                                                      
                                                       
3pe6A             hhhhhhhh h   ssssss                   hhh hhhhhhhhhh


TARGET    1          QAAAE NVFFVAHSYG GLAFVELMIQ READVKSKVT AVALTDSVHN
3pe6A     107   mqk--dypgl pvfllghsmg gaiailtaae rp----ghfa gmvlisplvl
                                                                      
TARGET                        ssssshh hhhhhhhhh  sss  sss   sssss     
3pe6A           hhh  h     sssssssshh hhhhhhhhh             ssssss   s


TARGET    46    V -------- ---------- ---------- ---------- ----------
3pe6A     151   anpesattfk vlaakvlnsv lpnlssgpid ssvlsrnkte vdiynsdpli
                                                                      
TARGET                                                                
3pe6A           sshhhhhhhh hhhhhhhh                     hhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
3pe6A     201   craglkvcfg iqllnavsrv eralpkltvp flllqgsadr lcdskgayll
                                                                      
TARGET                                                                
3pe6A                 hhhh hhhhhhhhhh hhhhhh   s sssssss    sss hhhhhh


TARGET          ---------- ---------- ---------- ---------- -----     
3pe6A     251   melaksqdkt lkiyegayhv lhkelpevtn svfheinmwv sqrta     
                                                                      
TARGET                                                                
3pe6A           hhh    sss ssss            hhhhh hhhhhhhhhh hhh       



Quality


Template's ligands section
Ligands in the template: ZYH: 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3pe6 is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3pe6.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 17.391) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Fri Feb  6 00:23:48
2015 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with A found
 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                       *********
 - building model based on 3pe6A (282-327) was successful 
 -                             **********************************
 - building model based on 3jweA (146-324) was successful 
 -                        *****************************************
 - building model based on 3qitD (118-329) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Fri Feb  6 00:25:17
2015 




Template Description
Match Chain SeqId

3pe6: CRYSTAL STRUCTURE OF A SOLUBLE FORM OF HUMAN MGLL IN COMPLINHIBITOR
Solved by: X-RAY, Resolution: 1.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

282-327 3pe6A 17%
[Model]

3jwe: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE IN COMPLEWITH SAR629
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

274-327 3jweB 17%
[Model]
146-324 3jweA 10%
[Model]

4uuq: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE IN COMPLEWITH SAR127303
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

274-327 4uuqB 17%
[Model]
270-325 4uuqA 16%
[Model]

3jw8: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

270-325 3jw8A 16%
[Model]
274-327 3jw8B 17%
[Model]

3hju: CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

270-325 3hjuB 16%
[Model]
271-326 3hjuA 16%
[Model]

3qit: THIOESTERASE DOMAIN FROM CURACIN BIOSYNTHETIC PATHWAY
Solved by: X-RAY, Resolution: 1.68A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

118-328 3qitA 9%
[Model]
267-330 3qitB 16%
[Model]
118-329 3qitC 8%
[Model]
118-329 3qitD 9%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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