SWISS-MODEL Repository - Model Details

Model Overview
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1
417

Sequence
UniProt Q3TNH5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Arb2

Model 3D Structure
Model information:
Modelled residue range: 266 to 325
Based on template: [ 3wwp ]  
Sequence Identity [%]: 18%
Model date: 2015-05-07
Revision date: 2015-05-05

Quaternary structure information: [details]
Template (3wwp): DIMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: CIT: 1, EDO: 2, SO4: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

                                                       
3wwpL     65535  gfmvsahfil ihtichgawl wyklipllqs aghnataidl vasgidprql
                                                                      
                                                       
3wwpL                sssss s       h    hhhhhhhh    sss               


TARGET    1          GSPEE HAVYVWDHFI -AQAAAENVF FVAHSYGGLA FVELMIQREA
3wwpL     49    eqi--gtweq yseplft-li esipegkkvi lvgesgggin ialaaekyp-
                                                                      
TARGET                 hhh    hhhh               sssss hhhh hhhhhhh   
3wwpL                  hhh    hhhh hh h        s sssss hhhh hhhhhhh   


TARGET    45    DVKSKVTAVA LTDSVH --- ---------- ---------- ----------
3wwpL     95    ---ekvsalv fhnalmpdid hspafvykkf sevftdwkds ifsnytygnd
                                                                      
TARGET                 sss ss                                         
3wwpL                  sss sss           hhhhhhh hhh        sssssss  s


TARGET          ---------- ---------- ---------- ---------- ----------
3wwpL     142   tvtavelgdr tlaenifsns piedvelakh lvrkgsffeq dldtlpnfts
                                                                      
TARGET                                                                
3wwpL           ssssss  hh hhhh        hhhhhhhh          hh hhhh      


TARGET          ---------- ---------- ---------- ---------- ----------
3wwpL     192   egygsirrvy vygeedqifs rdfqlwqinn ykpdkvycvp sadhkiqisk
                                                                      
TARGET                                                                
3wwpL                 ssss ssss       hhhhhhhhhh     sssss       hhh  


TARGET          ---------- ----                                       
3wwpL     242   vnelaqilqe vans                                       
                                                                      
TARGET                                                                
3wwpL            hhhhhhhhh hhh                                        



Quality


Template's ligands section
Ligands in the template: CIT: 1, EDO: 2, SO4: 2.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3wwp is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3wwp.pdb2.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 18.033) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN
To build the complex the following chains of the complex has been additionally identified: 3wwpG


Template Selection
 - Start SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Thu May  7 20:15:02
2015 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with A found
 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                    ************
 - building model based on 3wwpL (266-325) was successful 
 -                             **********************************
 - building model based on 3wwpR (148-325) was successful 
 -                        *****************************************
 - building model based on 3qitD (118-329) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:d977c764758a1ff5036bb689847dc536 on BC2-cluster at Thu May  7 20:16:32
2015 




Template Description
Match Chain SeqId

3jwe: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE IN COMPLEWITH SAR629
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

146-324 3jweA 10%
[Model]
274-327 3jweB 17%
[Model]

3pe6: CRYSTAL STRUCTURE OF A SOLUBLE FORM OF HUMAN MGLL IN COMPLINHIBITOR
Solved by: X-RAY, Resolution: 1.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

282-327 3pe6A 17%
[Model]

3wwo: S-SELECTIVE HYDROXYNITRILE LYASE FROM BALIOSPERMUM MONTANU
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

267-325 3wwoB 17%
[Model]
268-325 3wwoA 17%
[Model]

3jw8: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.36A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

270-325 3jw8A 16%
[Model]
274-327 3jw8B 17%
[Model]

3hju: CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

270-325 3hjuB 16%
[Model]
271-326 3hjuA 16%
[Model]

4uuq: CRYSTAL STRUCTURE OF HUMAN MONO-GLYCERIDE LIPASE IN COMPLEWITH SAR127303
Solved by: X-RAY, Resolution: 2.36A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

274-327 4uuqB 17%
[Model]
270-325 4uuqA 16%
[Model]

3wwp: S-SELECTIVE HYDROXYNITRILE LYASE FROM BALIOSPERMUM MONTANU
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

148-325 3wwpA 11%
[Model]
148-325 3wwpB 11%
[Model]
266-325 3wwpG 18%
[Model]
148-325 3wwpM 11%
[Model]
266-325 3wwpL 18%
[Model]
148-325 3wwpR 11%
[Model]

3qit: THIOESTERASE DOMAIN FROM CURACIN BIOSYNTHETIC PATHWAY
Solved by: X-RAY, Resolution: 1.68A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

118-328 3qitA 9%
[Model]
267-330 3qitB 16%
[Model]
118-329 3qitC 8%
[Model]
118-329 3qitD 9%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.