SWISS-MODEL Repository - Model Details

Model Overview
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1
634

Sequence
UniProt Q46455
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
GTP_EFTU
GTP_EFTU_D2
SelB-wing_1
SelB-wing_2
SelB-wing_3

Model 3D Structure
Model information:
Modelled residue range: 4 to 354
Based on template: [ 1kjz ]  
Sequence Identity [%]: 30%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4            IVV GTAGHVDHGK TVLVKALTGV DTDRLKEEKE RGISIELGFA
1kjzA     6     srqae--vni gmvghvdhgk ttltkaltgv wtd-hseelr rgitikigfa
                                                                      
TARGET                 sss sss      h hhhhhhhh                     sss
1kjzA                  sss sss      h hhhhhhhh          hh         sss


TARGET    47    PLTLP----- ---------- -------SGR QLGLVDVPGH ERFIRQMLAG
1kjzA     54    daeirrcpnc grystspvcp ycghetefvr rvsfidapgh ealmttmlag
                                                                      
TARGET          ssss                           s ssssss   h hhhhhhhhh 
1kjzA           sssssss     sss  sss     sssssss ssssss   h hhhhhhhhh 


TARGET    75    VGGMDLVMLV VAADEGV-MP QTREHLAIID LLQIKKGIIV ITKIDLVEAD
1kjzA     104   aslmdgailv iaanepcprp qtrehlmalq iigqkniiia qnkielvdke
                                                                      
TARGET               sssss sss        hhhhhhhhhh hh   sssss ss      hh
1kjzA                sssss sss      h hhhhhhhhhh hh   sssss sss     hh


TARGET    124   WLELVREEVR QAVKGTVLED APLVEVSALT GEGIAELREQ LDALAAVTPP
1kjzA     154   kalenyrqik efiegtvaen apiipisalh ganidvlvka iedfip-tpk
                                                                      
TARGET          hhhhhhhhhh hhh    hh   sssss        hhhhhhh hhhh      
1kjzA           hhhhhhhhhh hhh    hh   sssss        hhhhhhh hhhh      


TARGET    174   RPAAGRVRLP IDRVFSVT-- --GFGTVVTG TLWSGTIKVG DELEVQP---
1kjzA     203   rdpnkppkml vlrsfdvnkp gklvggvldg sivqgklkvg deieirpgvp
                                                                      
TARGET                 sss sssss           sssss sss   sss  ssssss    
1kjzA                  sss sssss           sssss sss   sss  ssssss  ss


TARGET    217   ---------E GLKTRARNLQ VHGRTVKEAR AGQRVAVNLA GIE---TEAV
1kjzA     257   yeehgrikye pitteivslq aggqfveeay pgglvgvgtk ldpyltkgdl
                                                                      
TARGET                      sssssssss s  ssssss      ssssss           
1kjzA           sss  sssss  sssssssss s  ssssss      ssssss           


TARGET    255   HRGSSLLTPG FLTPTY-RLD ASFKLLN--- ------GARP LANRDRVHFY
1kjzA     307   magnvvgkpg klppvwdslr levhllervv gteqelkvep ikrkevllln
                                                                      
TARGET             ssss            ss ssssss                    ssssss
1kjzA              ssss       sssssss ssssss        hh          ssssss


TARGET    295   LGTSEALGRV VLLDRDELNG GEEALIQLLM EKPVVASRED RFILRSYS--
1kjzA     357   vgtartmglv tglgk----- ---deievkl qipvcaepgd rvaisrqigs
                                                                      
TARGET          s  sssssss ssss          sssssss s        s ssssss    
1kjzA           s  sssssss ssss          sssssss s  sss   s ssssssss  


TARGET    343   PMETIGGGII ID                                         
1kjzA     399   rwrligygii ke-                                        
                                                                      
TARGET            ssssssss s                                          
1kjzA           ssssssssss s

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b8aac355e037171ccb3867af6863de5f on BC2-cluster at Mon Sep  1 08:41:26 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>b8aac355e037171ccb3867af6863de5f
********************************************************************************
>1lvaA Evalue:1.3177e-140 SeqID:100.000 Method:BLAST Type:PDB
-----------------------------------------------*********************************
>1kjzA Evalue:0 SeqID:30.370 Method:HHSEARCH Type:MODEL
***************************************-****------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1lvaA          377            634            BLAST          PDB            
1kjzA          4              354            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b8aac355e037171ccb3867af6863de5f on gopt-65.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 08:46:29 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.