SWISS-MODEL Repository - Model Details

Model Overview
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1
284

Sequence
UniProt Q55135
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Formyl_trans_N
ACT

Model 3D Structure
Model information:
Modelled residue range: 90 to 283
Based on template: [ 1c2t ]  
Sequence Identity [%]: 25%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    90       RLALWVS KQDHCLLDIL WRWRSGELRC EIPLIISNHP DLKS--IADQ
1c2tA     1     m--nivvlis gngsnlqaii dacktnkikg tvravfsnka dafglerarq
                                                                      
TARGET               ssss     hhhhhhh hhhhh         ssss              
1c2tA           s  ssssss     hhhhhhh hhhhh      sssssss       hhhhhhh


TARGET    135   FGIDFHCLPI T-KENKLAQE TAELALLKQY QIDLVVLAKY LQILTTDFVV
1c2tA     49    agiathtlia safdsreayd reliheidmy apdvvvlagf mrilspafvs
                                                                      
TARGET             sssss        hhhhh hhhhhhhhh     sssss        hhhhh
1c2tA           h  sssss        hhhhh hhhhhhhhh     sssss        hhhhh


TARGET    184   QFP-NIINIH HSFLPAFPGA NPYHRAHERG VKIIGATAHY ATAQLDEGPI
1c2tA     99    hyagrllnih psllpkypgl hthrqaleng deehgtsvhf vtdeldggpv
                                                                      
TARGET          h    sssss ss          hhhhhhhh   sssssssss s       ss
1c2tA           h   ssssss ss          hhhhhhhh   sssssssss s       ss


TARGET    233   IEQDVVRVSH RDNVDDLIRK GRDLERVVLA RAVRLHLQHR ILVYDNRTVV
1c2tA     149   ilqakvpvfa gdsedditar vqtqehaiyp lviswfadgr lkmhenaawl
                                                                      
TARGET          ssssssss      hhhhhhh hhhhhhhhhh hhhhhhh  s ssss  ssss
1c2tA           ssssssss      hhhhhhh hhhhhhhhhh hhhhhhh  s ssss  ssss


TARGET    283   F -------- -                                          
1c2tA     199   dgqrlppqgy a                                          
                                                                      
TARGET          s                                                     
1c2tA           s sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3cd53a107f66fabf8f02dd840502e569 on BC2-cluster at Sun Aug 31 15:29:26 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>3cd53a107f66fabf8f02dd840502e569
***********************************************************************
>1c2tA Evalue:3.3E-40 SeqID:25.758 Method:HHSEARCH Type:MODEL
----------------------*************************************************
>1zpvA Evalue:4.5E-09 SeqID:19.277 Method:HHSEARCH Type:MODEL
-*********************-------------------------------------------------
>1u8sA Evalue:8.7E-14 SeqID:12.426 Method:HHSEARCH Type:MODEL
--************-***************************-----------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1c2tA          90             283            HHSEARCH       BUILT          
1zpvA          4              86             HHSEARCH       BUILT          
1u8sA          8              169            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: 3cd53a107f66fabf8f02dd840502e569 on gopt-61.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 15:31:44 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.