SWISS-MODEL Repository - Model Details

Model Overview
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1
40

Sequence
UniProt Q55329
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q55329: 1148.sml0008

Domain
Link to: [ InterPro ]
PSI_PsaJ

Model 3D Structure
Model information:
Modelled residue range: 1 to 40
Based on template: [ 1jb0 ]  
Sequence Identity [%]: 67%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MDGLKSFL STAPVMIMAL LTFTAGILIE FNRFYPDLLF HP        
1jb0J     1       mkhfltyl stapvlaaiw mtitagilie fnrfypdllf hpl       
                                                                      
TARGET             hhhhhhh    hhhhhhh hhhhhhhhhh hhhh                 
1jb0J              hhhhh    hhhhhhhhh hhhhhhhhhh hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 396f32d765bf9d9d8a905cc3819d3d4f on BC2-cluster at Sun Aug 31 00:14:43 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>396f32d765bf9d9d8a905cc3819d3d4f
****************************************
>1jb0J Evalue:5.28057e-06 SeqID:67.500 Method:BLAST Type:MODEL
****************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1jb0J          1              40             BLAST          BUILT          

FINISHED PIPELINE ON ID: 396f32d765bf9d9d8a905cc3819d3d4f on gopt-56.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 00:14:58 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.